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Jobsub ID 14205.3@dunegpschedd02.fnal.gov

Jobsub ID14205.3@dunegpschedd02.fnal.gov
Workflow ID270
Stage ID1
User nameichong@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
GPUNo
RSS bytes4194304000 (4000 MiB)
Wall seconds limit80000 (22 hours)
Submitted time2025-08-03 17:50:49
SiteNL_NIKHEF
EntryVIRGO_NL_NIKHEF_klomp
Last heartbeat2025-08-03 18:01:20
From worker nodeHostnamewn-pep-013.farm.nikhef.nl
cpuinfoIntel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes4194304000 (4000 MiB)
Wall seconds limit129600 (36 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2025-08-03 17:51:32
Input filesfardet-hd:atmnu_max_weighted_randompolicy_dune10kt_1x2x6_74551443_765_20231207T113416Z_gen_g4_detsim_hitreco__20240510T054254Z_reco2.root
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-08-03 18:01:20
Saved logsjustin-logs:14205.3-dunegpschedd02.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

o track found for track-like PFParticle with ID 2
Begin processing the 95th record. run: 74551443 subRun: 1 event: 76595 at 03-Aug-2025 20:00:57 CEST
Analysing.

Warning: there was no track found for track-like PFParticle with ID 7
Begin processing the 96th record. run: 74551443 subRun: 1 event: 76596 at 03-Aug-2025 20:00:58 CEST
Analysing.

Warning: there was no track found for track-like PFParticle with ID 4
Begin processing the 97th record. run: 74551443 subRun: 1 event: 76597 at 03-Aug-2025 20:00:59 CEST
Analysing.

Warning: there was no track found for track-like PFParticle with ID 2
Begin processing the 98th record. run: 74551443 subRun: 1 event: 76598 at 03-Aug-2025 20:01:00 CEST
Analysing.

Warning: there was no track found for track-like PFParticle with ID 1
Begin processing the 99th record. run: 74551443 subRun: 1 event: 76599 at 03-Aug-2025 20:01:01 CEST
Analysing.

Warning: there was no vertex found for PFParticle with ID 8
Warning: there was no track found for track-like PFParticle with ID 8
Warning: there was no track found for track-like PFParticle with ID 9
Begin processing the 100th record. run: 74551443 subRun: 1 event: 76600 at 03-Aug-2025 20:01:02 CEST
Analysing.

Warning: there was no track found for track-like PFParticle with ID 4
03-Aug-2025 20:01:03 CEST  Closed input file "root://se1.farm.particle.cz:1094//dune/RSE/fardet-hd/dd/db/atmnu_max_weighted_randompolicy_dune10kt_1x2x6_74551443_765_20231207T113416Z_gen_g4_detsim_hitreco__20240510T054254Z_reco2.root"

========================================================================================================================
TimeTracker printout (sec)                Min           Avg           Max         Median          RMS         nEvts   
========================================================================================================================
Full event                             0.440055      0.790856       1.36393      0.811851      0.147325        100    
------------------------------------------------------------------------------------------------------------------------
source:RootInput(read)                 0.0143455     0.0214822     0.0290774     0.0150141    0.00705707       100    
end_path:analysistree:AnalysisTree     0.425376      0.769271       1.34934      0.784237      0.147875        100    
========================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 7236.54 MB
  Peak resident set size usage (VmHWM): 881.975 MB
====================================================================================================
Art has completed and will exit with status 0.
=== End last 100 lines of third lar log file ===
=== Start last 100 lines of lar log file ===
* Association Name:  clusterAssociationsbase  * Instance Name:  * Type: art::Assns<recob::Shower, recob::Cluster, void>*            *
* Association Name:  hitAssociationsbase      * Instance Name:  * Type: art::Assns<recob::Shower, recob::Hit, void>*                *
* Association Name:  pfShowerAssociationsbase * Instance Name:  * Type: art::Assns<recob::Shower, recob::PFParticle, void>*         *
* Association Name:  spShowerAssociationsbase * Instance Name:  * Type: art::Assns<recob::Shower, recob::SpacePoint, void>*         *
*************************************************************************************************************************************
03-Aug-2025 19:52:12 CEST  Initiating request to open input file "root://se1.farm.particle.cz:1094//dune/RSE/fardet-hd/dd/db/atmnu_max_weighted_randompolicy_dune10kt_1x2x6_74551443_765_20231207T113416Z_gen_g4_detsim_hitreco__20240510T054254Z_reco2.root"
03-Aug-2025 19:52:14 CEST  Opened input file "root://se1.farm.particle.cz:1094//dune/RSE/fardet-hd/dd/db/atmnu_max_weighted_randompolicy_dune10kt_1x2x6_74551443_765_20231207T113416Z_gen_g4_detsim_hitreco__20240510T054254Z_reco2.root"
Begin processing the 1st record. run: 74551443 subRun: 1 event: 76501 at 03-Aug-2025 19:52:16 CEST
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 885 XUs and 1380 XVs -> 390 XUVs
C:0 T:2 0 XUs and 0 XVs -> 0 XUVs
390 XUVs total
200 collection wire objects
390 potential space points
Neighbour search...
17764 tests to find 10040 neighbours
Iterating with no regularization...
Begin: 2.4286e+07
0 1.79263e+07
1 1.72846e+07
2 1.72037e+07
3 1.71925e+07
Now with regularization...
Begin: 1.06458e+07
0 1.06368e+07
---MC-PARTICLE-MONITORING-----------------------------------------------------------------------

BeamNeutrinos: 

--Primary 0, MCPDG 11, Energy 0.489894, Dist. 48.2743, nMCHits 667 (261, 185, 221)
MCPDG 11, Energy 0.489894, Dist. 48.2743, nMCHits 667 (261, 185, 221)

--Primary 1, MCPDG 2212, Energy 1.08453, Dist. 14.8321, nMCHits 53 (29, 10, 14)
MCPDG 2212, Energy 1.08453, Dist. 14.8321, nMCHits 53 (29, 10, 14)
------------------------------------------------------------------------------------------------
Loaded the TorchScript model '/cvmfs/dune.osgstorage.org/pnfs/fnal.gov/usr/dune/persistent/stash//PandoraNetworkData/PandoraNet_Vertex_DUNEFD_HD_Atmos_1_U_v04_03_00.pt'
Loaded the TorchScript model '/cvmfs/dune.osgstorage.org/pnfs/fnal.gov/usr/dune/persistent/stash//PandoraNetworkData/PandoraNet_Vertex_DUNEFD_HD_Atmos_1_V_v04_03_00.pt'
Loaded the TorchScript model '/cvmfs/dune.osgstorage.org/pnfs/fnal.gov/usr/dune/persistent/stash//PandoraNetworkData/PandoraNet_Vertex_DUNEFD_HD_Atmos_1_W_v04_03_00.pt'
Operating in training mode.
The eid is 0
Graph saved to training1_CaloHitListW_graph.data
Size of file training1_CaloHitListW_graph.data is 5724 bytes.
The eid is 0
Graph saved to training1_CaloHitListU_graph.data
Size of file training1_CaloHitListU_graph.data is 7052 bytes.
The eid is 0
Graph saved to training1_CaloHitListV_graph.data
Size of file training1_CaloHitListV_graph.data is 4820 bytes.
Operating in inference mode.
Operating in training mode.
The eid is -1
Graph saved to training2_CaloHitListW_graph.data
Size of file training2_CaloHitListW_graph.data is 5724 bytes.
The eid is -1
Graph saved to training2_CaloHitListU_graph.data
Size of file training2_CaloHitListU_graph.data is 7052 bytes.
The eid is -1
Graph saved to training2_CaloHitListV_graph.data
Size of file training2_CaloHitListV_graph.data is 4820 bytes.
Boundary wire vector sizes: 196, 290, 235
minwire 0: 399
minwire 1: 2739
minwire 2: 49
Used alternate method to get min and max tdcs due to vertex determination failure: 0, 499
Used alternate method to get min and max wires due to vertex determination failure: 2379, 2878
Used alternate method to get min and max tdcs due to vertex determination failure: 0, 499
Used alternate method to get min and max tdcs due to vertex determination failure: 0, 499
03-Aug-2025 19:52:19 CEST  Opened output file with pattern "atmnu_max_weighted_randompolicy_dune10kt_1x2x6_74551443_765_20231207T113416Z_gen_g4_detsim_hitreco__20240510T054254Z_reco2_graph_2025-08-03T_175136Z.root"
03-Aug-2025 19:58:36 CEST  Closed input file "root://se1.farm.particle.cz:1094//dune/RSE/fardet-hd/dd/db/atmnu_max_weighted_randompolicy_dune10kt_1x2x6_74551443_765_20231207T113416Z_gen_g4_detsim_hitreco__20240510T054254Z_reco2.root"
Malformed TimeTracker database.  The TimeEvent table is empty, but
the TimeModule table is not.  This can happen if an exception has
been thrown from a module while processing the first event.  Any
saved database file is suspect and should not be used.

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 8588.33 MB
  Peak resident set size usage (VmHWM): 1686.25 MB
====================================================================================================
%MSG-s ArtException:  PostEndJob 03-Aug-2025 19:58:36 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
  EventProcessor: an exception occurred during current event processing
  ---- ScheduleExecutionFailure BEGIN
    Path: ProcessingStopped.
    ---- BadAlloc BEGIN
      A bad_alloc exception was thrown while processing module CVNEvaluator/cvneva run: 74551443 subRun: 1 event: 76501
      The job has probably exhausted the virtual memory available to the process.
    ---- BadAlloc END
    Exception going through path reco
  ---- ScheduleExecutionFailure END
---- EventProcessorFailure END
---- FatalRootError BEGIN
  Fatal Root Error: TTree::SetEntries
  Tree branches have different numbers of entries, eg EventAuxiliary has 0 entries while recob::PCAxisrecob::Showervoidart::Assns_pandoraShower__Reco2. has 100 entries.
  ROOT severity: 2000
---- FatalRootError END
%MSG
Art has completed and will exit with status 1.
=== End last 100 lines of lar log file ===
=== Generated output files ===
14205.3_dunegpschedd02.fnal.gov.logs.tgz
RootOutput-d5fb-9ac8-9723-39ae.root
ana_tree_hd.root
analysiseid.root
atmnu_max_weighted_randompolicy_dune10kt_1x2x6_74551443_765_20231207T113416Z_gen_g4_detsim_hitreco__20240510T054254Z_reco2_graph_2025-08-03T_175136Z.log
debugprod.log
jobscript.log
reco_hist.root
secondary_atmnu_max_weighted_randompolicy_dune10kt_1x2x6_74551443_765_20231207T113416Z_gen_g4_detsim_hitreco__20240510T054254Z_reco2_graph_2025-08-03T_175136Z.log
third_atmnu_max_weighted_randompolicy_dune10kt_1x2x6_74551443_765_20231207T113416Z_gen_g4_detsim_hitreco__20240510T054254Z_reco2_graph_2025-08-03T_175136Z.log
training1_CaloHitListU.csv
training1_CaloHitListU_graph.data
training1_CaloHitListV.csv
training1_CaloHitListV_graph.data
training1_CaloHitListW.csv
training1_CaloHitListW_graph.data
training2_CaloHitListU.csv
training2_CaloHitListU_graph.data
training2_CaloHitListV.csv
training2_CaloHitListV_graph.data
training2_CaloHitListW.csv
training2_CaloHitListW_graph.data
justIN time: 2025-08-04 15:59:37 UTC       justIN version: 01.04.00