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Jobsub ID 14839.162@dunegpschedd02.fnal.gov

Jobsub ID14839.162@dunegpschedd02.fnal.gov
Workflow ID537
Stage ID1
User namecalcuttj@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
GPUNo
RSS bytes8387559424 (7999 MiB)
Wall seconds limit80000 (22 hours)
Submitted time2025-08-06 14:28:34
SiteNL_SURFsara
EntryDUNE_SurfSARA_arc03
Last heartbeat2025-08-06 16:35:55
From worker nodeHostnamewn-la-15.gina.surf.nl
cpuinfoAMD EPYC 9754 128-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes10485760000 (10000 MiB)
Wall seconds limit129600 (36 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2025-08-06 15:40:44
Input filesmonte-carlo-000537-000905
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-08-06 16:35:55
Saved logsjustin-logs:14839.162-dunegpschedd02.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

ruction
Photon propagation time model initalized.
%MSG
%MSG-i PDFastSimPAR:  PDFastSimPAR:PDFastSim@Construction  06-Aug-2025 17:58:23 CEST ModuleConstruction
Using Lite Photons
%MSG
%MSG-i PDFastSimPAR:  PDFastSimPAR:PDFastSim@Construction  06-Aug-2025 17:58:23 CEST ModuleConstruction
PDFastSimPAR Initialization finish.
Simulate using semi-analytic model for number of hits.
%MSG
06-Aug-2025 17:58:23 CEST  Initiating request to open input file "pdhd_memtest_1_14839_162_1754494864_stage1_stage2_stage3.root"
%MSG-i Root_Information:  TriggerResultInserter:TriggerResults@Construction  TClass::Init() 06-Aug-2025 17:58:24 CEST ModuleConstruction
no dictionary for class sim::IDE is available
ROOT severity: 2000
%MSG
06-Aug-2025 17:58:24 CEST  Opened input file "pdhd_memtest_1_14839_162_1754494864_stage1_stage2_stage3.root"
Begin processing the 1st record. run: 1 subRun: 0 event: 1 at 06-Aug-2025 17:58:25 CEST
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  06-Aug-2025 17:58:25 CEST run: 1 subRun: 0 event: 1
Random seed for this event, engine 'PDFastSim.photon': 66178917
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  06-Aug-2025 17:58:25 CEST run: 1 subRun: 0 event: 1
Random seed for this event, engine 'PDFastSim.scinttime': 590728535
%MSG
06-Aug-2025 18:03:42 CEST  Opened output file with pattern "pdhd_memtest_1_14839_162_1754494864_stage1_stage2_stage3_stage4.root"
%MSG-i FastCloning:  PostProcessEvent 06-Aug-2025 18:03:42 CEST  run: 1 subRun: 0 event: 1
Fast cloning event data products from input file.
%MSG
Begin processing the 2nd record. run: 1 subRun: 0 event: 2 at 06-Aug-2025 18:05:00 CEST
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  06-Aug-2025 18:05:00 CEST run: 1 subRun: 0 event: 2
Random seed for this event, engine 'PDFastSim.photon': 261073791
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  06-Aug-2025 18:05:00 CEST run: 1 subRun: 0 event: 2
Random seed for this event, engine 'PDFastSim.scinttime': 500880603
%MSG
Begin processing the 3rd record. run: 1 subRun: 0 event: 3 at 06-Aug-2025 18:13:19 CEST
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  06-Aug-2025 18:13:19 CEST run: 1 subRun: 0 event: 3
Random seed for this event, engine 'PDFastSim.photon': 75701876
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  06-Aug-2025 18:13:19 CEST run: 1 subRun: 0 event: 3
Random seed for this event, engine 'PDFastSim.scinttime': 873359243
%MSG
Begin processing the 4th record. run: 1 subRun: 0 event: 4 at 06-Aug-2025 18:18:42 CEST
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  06-Aug-2025 18:18:42 CEST run: 1 subRun: 0 event: 4
Random seed for this event, engine 'PDFastSim.photon': 445516056
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  06-Aug-2025 18:18:42 CEST run: 1 subRun: 0 event: 4
Random seed for this event, engine 'PDFastSim.scinttime': 659058337
%MSG
Begin processing the 5th record. run: 1 subRun: 0 event: 5 at 06-Aug-2025 18:23:51 CEST
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  06-Aug-2025 18:23:51 CEST run: 1 subRun: 0 event: 5
Random seed for this event, engine 'PDFastSim.photon': 297182601
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  06-Aug-2025 18:23:51 CEST run: 1 subRun: 0 event: 5
Random seed for this event, engine 'PDFastSim.scinttime': 36847198
%MSG
06-Aug-2025 18:33:40 CEST  Closed input file "pdhd_memtest_1_14839_162_1754494864_stage1_stage2_stage3.root"

================================================================================================================================
TimeTracker printout (sec)                        Min           Avg           Max         Median          RMS         nEvts   
================================================================================================================================
Full event                                      288.987       397.263       563.053       352.372       106.82          5     
--------------------------------------------------------------------------------------------------------------------------------
source:RootInput(read)                        0.00237257    0.00940318     0.0126437     0.0109327    0.00379392        5     
simulate:PDFastSim:PDFastSimPAR                 229.605       349.807       563.043       300.317       124.045         5     
[art]:TriggerResults:TriggerResultInserter    4.1834e-05    6.27462e-05   0.000135673   4.5919e-05    3.65158e-05       5     
end_path:out1:RootOutput                       7.922e-06    1.48142e-05   3.8628e-05     9.073e-06    1.19193e-05       5     
end_path:out1:RootOutput(write)                 52.0506       59.3067       69.1118       58.0322       6.23734         4     
================================================================================================================================
%MSG-i NuRandomService:  RootOutput:out1@EndJob 06-Aug-2025 18:33:43 CEST  ModuleEndJob

Summary of seeds computed by the NuRandomService
Random policy: 'perEvent'
  algorithm version: EventTimestamp_v1
   Configured value          Last value   ModuleLabel.InstanceName
        (per event)           297182601   PDFastSim.photon
        (per event)            36847198   PDFastSim.scinttime

%MSG

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 10516.7 MB
  Peak resident set size usage (VmHWM): 9543.34 MB
====================================================================================================

TrigReport ---------- Event summary -------------
TrigReport Events total = 5 passed = 5 failed = 0

TrigReport ---------- Modules in End-path ----------
TrigReport        Run    Success      Error Name
TrigReport          5          5          0 out1

TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 2106.752827 Real = 2117.882367

MemReport  ---------- Memory summary [base-10 MB] ------
MemReport  VmPeak = 10516.7 VmHWM = 9543.34

%MSG-s ArtException:  PostEndJob 06-Aug-2025 18:35:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
  EventProcessor: an exception occurred during current event processing
  ---- FatalRootError BEGIN
    Fatal Root Error: TBufferFile::WriteByteCount
    bytecount too large (more than 1073741822)
    ROOT severity: 3000
  ---- FatalRootError END
---- EventProcessorFailure END
---- FatalRootError BEGIN
  Fatal Root Error: TTree::SetEntries
  Tree branches have different numbers of entries, eg EventAuxiliary has 4 entries while art::RNGsnapshots_rns__IonAndScintPDExt. has 10 entries.
  ROOT severity: 2000
---- FatalRootError END
%MSG
Art has completed and will exit with status 1.

Stderr:
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  IonAndScint
  IonAndScintExternal
  PDFastSimExternal
  largeant
  rns
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_08_02d00/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25610 nodes/ 5537 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
registering to  primaryGeneratorActionsMap_
registering to   eventActionsMap_
registering to   trackingActionsMap_
registering to  steppingActionsMap_
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_U (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_V (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_Y (Potential memory leak).

Error in processing stage4
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  IonAndScint
  IonAndScintExternal
  PDFastSimExternal
  largeant
  rns
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_08_02d00/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25610 nodes/ 5537 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
registering to  primaryGeneratorActionsMap_
registering to   eventActionsMap_
registering to   trackingActionsMap_
registering to  steppingActionsMap_
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_U (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_V (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_Y (Potential memory leak).

Error running. Exiting with 1
justIN time: 2025-08-16 19:53:50 UTC       justIN version: 01.04.01