Jobsub ID 232488.10@dunegpschedd02.fnal.gov
| Jobsub ID | 232488.10@dunegpschedd02.fnal.gov |
| Workflow ID | 9298 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-10-24 05:50:38 |
| Site | ES_PIC |
| Entry | DUNE_T1_ES_PIC_ce16-multicore |
| Last heartbeat | 2025-10-24 07:44:58 |
| From worker node | Hostname | tds511.pic.es |
| cpuinfo | AMD EPYC 7513 32-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 216000 (60 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | outputting_failed |
| Started | 2025-10-24 05:52:15 |
| Input files | vd-protodune:np02vd_raw_run040222_0245_df-s05-d0_dw_0_20251024T044926.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-10-24 07:44:58 |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
=========
Full event 64.2493 119.609 349.193 94.5575 68.8236 47
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 8.3217e-05 0.000122201 0.000347856 0.000115187 4.03746e-05 47
produce:tpcrawdecoder:PDVDTPCReader 10.4312 14.4959 22.2543 14.2461 2.8713 47
produce:triggerrawdecoder:PDVDTriggerReader4 0.504601 0.512643 0.562632 0.508732 0.0106519 47
produce:pdvddaphne:DAPHNEReaderPDVD 0.000343848 0.000485302 0.0018412 0.000416075 0.000243506 47
produce:ophit:OpHitFinder 8.1804e-05 0.000187816 0.00185228 0.000130066 0.000276593 47
produce:opflash:OpFlashFinderVerticalDrift 5.3601e-05 0.000119414 0.000642831 0.000107754 8.53487e-05 47
produce:wclsdatavd:WireCellToolkit 31.6604 51.2591 105.058 47.2045 17.9001 47
produce:gaushit:GausHitFinder 0.580432 0.951991 1.62614 0.898179 0.242995 47
produce:nhitsfilter:NumberOfHitsFilter 0.000146216 0.000336045 0.000760494 0.000293303 0.000141769 47
produce:reco3d:SpacePointSolver 3.63714 7.78212 20.6001 7.06991 3.52484 47
produce:hitpdune:DisambigFromSpacePoints 0.0400105 0.118923 0.370584 0.100355 0.0757004 47
produce:pandora:StandardPandora 9.29215 40.9502 239.854 24.0134 51.216 47
produce:pandoraTrack:LArPandoraTrackCreation 0.183396 0.575286 2.34932 0.473358 0.416266 47
produce:pandoraGnocalo:GnocchiCalorimetry 0.0122789 0.0248022 0.0409712 0.0234642 0.00674248 47
[art]:TriggerResults:TriggerResultInserter 3.2802e-05 6.22339e-05 0.000138141 5.7218e-05 2.16256e-05 47
end_path:out1:RootOutput 5.901e-06 1.33481e-05 4.6608e-05 1.0811e-05 7.03829e-06 47
end_path:out1:RootOutput(write) 2.32429 2.85272 4.37809 2.76991 0.376929 47
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5568.17 MB
Peak resident set size usage (VmHWM): 3627.5 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040222_0245_df-s05-d0_dw_0_20251024T044926_reco_stage1_20251024T072722_keepup.root
\tHists: np02vd_raw_run040222_0245_df-s05-d0_dw_0_20251024T044926_reco_stage1_20251024T072722_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040222_0245_df-s05-d0_dw_0_20251024T044926_reco_stage1_20251024T072722_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/ssl_.py", line 449, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/ssl_.py", line 493, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1041, in _create
self.do_handshake()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1310, in do_handshake
self._sslobj.do_handshake()
socket.timeout: _ssl.c:1112: The handshake operation timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 532, in increment
raise six.reraise(type(error), error, _stacktrace)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/packages/six.py", line 770, in reraise
raise value
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 385, in _make_request
self._raise_timeout(err=e, url=url, timeout_value=conn.timeout)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 336, in _raise_timeout
raise ReadTimeoutError(
urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 529, in send
raise ReadTimeout(e, request=request)
requests.exceptions.ReadTimeout: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)
Error in reco metadata 