Jobsub ID 236451.146@dunegpschedd02.fnal.gov
| Jobsub ID | 236451.146@dunegpschedd02.fnal.gov |
| Workflow ID | 9531 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 2 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-11-02 23:40:09 |
| Site | CZ_FZU |
| Entry | Nova_CZ_FZU_osgce1 |
| Last heartbeat | 2025-11-03 00:05:12 |
| From worker node | Hostname | lupin15.farm.particle.cz |
| cpuinfo | AMD EPYC 7532 32-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 2 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 172800 (48 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-11-02 23:40:42 |
| Input files | vd-protodune:np02vd_raw_run040346_2467_df-s04-d2_dw_0_20251102T223459.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-11-03 00:05:12 |
| Saved logs | justin-logs:236451.146-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
01:03:26.627] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[01:03:26.627] I [ timer ] Timer: Total node execution : 57.21000036597252 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 58821 traces tagged "gauss"
FrameSaver: q=1.49323e+07 n=1250703 tag=gauss
wclsFrameSaver: saving 73462 traces tagged "wiener"
FrameSaver: q=1.60184e+07 n=1198233 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 1104 XUs and 1278 XVs -> 24 XUVs
C:0 T:1 1223 XUs and 763 XVs -> 30 XUVs
C:0 T:2 1614 XUs and 1415 XVs -> 59 XUVs
C:0 T:3 368 XUs and 546 XVs -> 12 XUVs
C:0 T:4 5656 XUs and 7627 XVs -> 429 XUVs
C:0 T:5 5495 XUs and 5266 XVs -> 228 XUVs
C:0 T:6 3071 XUs and 2309 XVs -> 86 XUVs
C:0 T:7 1851 XUs and 2224 XVs -> 98 XUVs
C:0 T:8 1598 XUs and 2805 XVs -> 96 XUVs
C:0 T:9 3278 XUs and 2927 XVs -> 380 XUVs
C:0 T:10 610 XUs and 1008 XVs -> 44 XUVs
C:0 T:11 1158 XUs and 997 XVs -> 127 XUVs
C:0 T:12 1650 XUs and 2335 XVs -> 137 XUVs
C:0 T:13 2369 XUs and 2219 XVs -> 125 XUVs
C:0 T:14 739 XUs and 954 XVs -> 45 XUVs
C:0 T:15 783 XUs and 698 XVs -> 49 XUVs
1969 XUVs total
1488 collection wire objects
1969 potential space points
Neighbour search...
33295 tests to find 14178 neighbours
Iterating with no regularization...
Begin: 2.23483e+10
0 2.22739e+10
1 2.22672e+10
Now with regularization...
Begin: 2.21346e+10
0 2.21345e+10
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Mon Nov 3 01:04:48 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/b3/45/np02vd_raw_run040346_2467_df-s04-d2_dw_0_20251102T223459.hdf5', file descriptor = 24, errno = 19, error message = 'No such device', buf = 0x3f357aa0, total read size = 885672, bytes this sub-read = 885672, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 9.9831e-05 125.271 202.972 129.037 49.4979 11
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 8.6781e-05 0.000101021 0.000158332 9.1861e-05 2.07481e-05 11
produce:tpcrawdecoder:PDVDTPCReader 12.9122 32.6607 85.7571 18.0376 25.1862 10
produce:triggerrawdecoder:PDVDTriggerReader4 0.47538 1.39748 6.38993 0.526502 1.88544 10
produce:pdvddaphne:DAPHNEReaderPDVD 0.000368094 0.000492297 0.00106391 0.00043021 0.00019253 10
produce:ophit:OpHitFinder 7.0041e-05 0.000196714 0.000911052 0.000122062 0.000239998 10
produce:opflash:OpFlashFinderVerticalDrift 5.5681e-05 0.000112968 0.000528857 6.6506e-05 0.000138876 10
produce:wclsdatavd:WireCellToolkit 47.1476 57.3595 75.1757 55.4706 8.61815 10
produce:gaushit:GausHitFinder 0.833012 1.09096 1.47328 0.931339 0.256943 10
produce:nhitsfilter:NumberOfHitsFilter 0.000223613 0.000328111 0.000484776 0.000320915 8.34298e-05 10
produce:reco3d:SpacePointSolver 8.03951 11.6124 18.169 11.029 3.20242 10
produce:hitpdune:DisambigFromSpacePoints 0.106111 0.175378 0.299542 0.14524 0.0658884 10
produce:pandora:StandardPandora 14.9979 26.3963 49.573 24.2454 9.97853 10
produce:pandoraTrack:LArPandoraTrackCreation 0.502414 0.792159 1.05194 0.839766 0.168812 10
produce:pandoraGnocalo:GnocchiCalorimetry 0.0211893 0.0319093 0.0396712 0.0321707 0.00551852 10
[art]:TriggerResults:TriggerResultInserter 1.9141e-05 3.77843e-05 9.2341e-05 2.797e-05 2.28351e-05 10
end_path:out1:RootOutput 5.63e-06 1.23281e-05 4.099e-05 9.535e-06 9.79468e-06 10
end_path:out1:RootOutput(write) 4.98414 6.23982 8.20494 5.94314 0.931469 10
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5087.42 MB
Peak resident set size usage (VmHWM): 2988.88 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 03-Nov-2025 01:04:48 CET ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 40346 subRun: 1 event: 227770
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 