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Jobsub ID 236722.29@dunegpschedd02.fnal.gov

Jobsub ID236722.29@dunegpschedd02.fnal.gov
Workflow ID9538
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors2
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-11-03 14:46:57
SiteUK_Manchester
EntryUBoone_T2_UK_Manchester_ce01
Last heartbeat2025-11-03 17:00:45
From worker nodeHostnamewn2207290.tier2.hep.manchester.ac.uk
cpuinfoAMD EPYC 7513 32-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors2
RSS bytes4194304000 (4000 MiB)
Wall seconds limit257400 (71 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2025-11-03 14:47:40
Input filesvd-protodune:np02vd_raw_run040346_3534_df-s04-d2_dw_0_20251103T134136.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-11-03 17:00:45
Saved logsjustin-logs:236722.29-dunegpschedd02.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                      9.3186e-05    0.000130288   0.00023404    0.000119454   3.5489e-05       23     
produce:tpcrawdecoder:PDVDTPCReader               22.002        24.0616       27.9173       23.8308       1.29528        23     
produce:triggerrawdecoder:PDVDTriggerReader4     0.677871      0.808773       2.15129      0.693343      0.365984        23     
produce:pdvddaphne:DAPHNEReaderPDVD             0.000416583   0.000538576   0.00108028    0.000481895   0.000161846      23     
produce:ophit:OpHitFinder                       8.9538e-05    0.000201814   0.000872119   0.000164679   0.000152648      23     
produce:opflash:OpFlashFinderVerticalDrift      6.3198e-05    0.000143318   0.000602262   0.000104397   0.00011816       23     
produce:wclsdatavd:WireCellToolkit                 65.13        239.322       1944.42       72.9366       509.861        23     
produce:gaushit:GausHitFinder                     1.00243       5.0789        44.6897       1.55322       11.3865        23     
produce:nhitsfilter:NumberOfHitsFilter          0.000291819   0.000800982   0.00486126    0.000401515    0.0012407       23     
produce:reco3d:SpacePointSolver                   8.84284       12.9739       21.4516       11.6235       3.39323        21     
produce:hitpdune:DisambigFromSpacePoints         0.0989268     0.225776      0.455041      0.197266      0.0831301       21     
produce:pandora:StandardPandora                   17.9722       44.4443       217.055       30.1101       43.0729        21     
produce:pandoraTrack:LArPandoraTrackCreation     0.698266       1.49956       4.26343       1.31962      0.830131        21     
produce:pandoraGnocalo:GnocchiCalorimetry        0.0253324     0.0441976     0.0601921     0.0435236    0.00847969       21     
[art]:TriggerResults:TriggerResultInserter      4.0957e-05    7.29126e-05   0.000149671   7.1905e-05    2.41293e-05      23     
end_path:out1:RootOutput                         5.36e-06     1.60703e-05   6.0654e-05    1.4607e-05    1.13143e-05      23     
end_path:out1:RootOutput(write)                   4.82886       6.77499       17.4231       5.83238       3.22825        23     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 20249.7 MB
  Peak resident set size usage (VmHWM): 18123 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040346_3534_df-s04-d2_dw_0_20251103T134136_reco_stage1_20251103T165537_keepup.root
\tHists: np02vd_raw_run040346_3534_df-s04-d2_dw_0_20251103T134136_reco_stage1_20251103T165538_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040346_3534_df-s04-d2_dw_0_20251103T134136_reco_stage1_20251103T165537_keepup.root
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
    conn = connection.create_connection(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
    raise err
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
    sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
    conn = self._new_conn()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
    raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x1469f15f1520>: Failed to establish a new connection: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040346_3534_df-s04-d2_dw_0_20251103T134136.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x1469f15f1520>: Failed to establish a new connection: [Errno 110] Connection timed out'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040346_3534_df-s04-d2_dw_0_20251103T134136.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x1469f15f1520>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata
justIN time: 2025-11-04 12:26:42 UTC       justIN version: 01.05.01