Jobsub ID 237167.58@dunegpschedd02.fnal.gov
| Jobsub ID | 237167.58@dunegpschedd02.fnal.gov |
| Workflow ID | 9583 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-11-04 08:49:54 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc02 |
| Last heartbeat | 2025-11-04 11:24:12 |
| From worker node | Hostname | wn-db-10.gina.surf.nl |
| cpuinfo | AMD EPYC 7702P 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-11-04 10:06:52 |
| Input files | vd-protodune:np02vd_raw_run040348_0156_df-s04-d3_dw_0_20251103T211754.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-11-04 11:24:12 |
| Saved logs | justin-logs:237167.58-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
========
Full event 116.717 171.75 326.736 145.143 56.6471 23
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 6.1548e-05 8.20221e-05 0.000221883 7.4142e-05 3.12711e-05 23
produce:tpcrawdecoder:PDVDTPCReader 13.3548 14.602 17.3667 14.1448 1.04634 23
produce:triggerrawdecoder:PDVDTriggerReader4 0.531715 0.568599 0.826173 0.554037 0.0589919 23
produce:pdvddaphne:DAPHNEReaderPDVD 0.000296426 0.000364625 0.000790688 0.000340399 9.63946e-05 23
produce:ophit:OpHitFinder 5.8171e-05 8.97624e-05 0.000559487 6.6417e-05 0.000100423 23
produce:opflash:OpFlashFinderVerticalDrift 4.2011e-05 6.20861e-05 0.000363694 4.794e-05 6.44193e-05 23
produce:wclsdatavd:WireCellToolkit 57.1837 98.081 160.025 87.5525 23.6893 23
produce:gaushit:GausHitFinder 0.728969 1.54416 5.805 1.25501 1.13622 23
produce:nhitsfilter:NumberOfHitsFilter 0.000188921 0.000454415 0.000884035 0.000355498 0.000226274 23
produce:reco3d:SpacePointSolver 6.29981 12.6862 28.1049 12.7939 5.12696 23
produce:hitpdune:DisambigFromSpacePoints 0.0920938 0.192753 0.392882 0.192159 0.0875538 23
produce:pandora:StandardPandora 9.89124 38.4284 174.146 27.848 35.715 23
produce:pandoraTrack:LArPandoraTrackCreation 0.366241 1.15671 2.32896 1.17469 0.542432 23
produce:pandoraGnocalo:GnocchiCalorimetry 0.0193857 0.0341935 0.0544294 0.0346635 0.00936353 23
[art]:TriggerResults:TriggerResultInserter 1.6452e-05 4.6159e-05 0.000218977 3.0569e-05 4.27546e-05 23
end_path:out1:RootOutput 4.358e-06 7.55657e-06 2.9284e-05 5.21e-06 5.37356e-06 23
end_path:out1:RootOutput(write) 3.88378 4.38711 5.36897 4.27104 0.411751 23
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 6202.97 MB
Peak resident set size usage (VmHWM): 4312.55 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040348_0156_df-s04-d3_dw_0_20251103T211754_reco_stage1_20251104T111336_keepup.root
\tHists: np02vd_raw_run040348_0156_df-s04-d3_dw_0_20251103T211754_reco_stage1_20251104T111336_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040348_0156_df-s04-d3_dw_0_20251103T211754_reco_stage1_20251104T111336_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/ssl_.py", line 449, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/ssl_.py", line 493, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1041, in _create
self.do_handshake()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1310, in do_handshake
self._sslobj.do_handshake()
socket.timeout: _ssl.c:1112: The handshake operation timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 532, in increment
raise six.reraise(type(error), error, _stacktrace)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/packages/six.py", line 770, in reraise
raise value
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 385, in _make_request
self._raise_timeout(err=e, url=url, timeout_value=conn.timeout)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 336, in _raise_timeout
raise ReadTimeoutError(
urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 529, in send
raise ReadTimeout(e, request=request)
requests.exceptions.ReadTimeout: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)
Error in reco metadata 