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Jobsub ID 238072.117@dunegpschedd01.fnal.gov

Jobsub ID238072.117@dunegpschedd01.fnal.gov
Workflow ID9298
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors1
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-10-24 04:50:35
SiteUK_Brunel
EntryCMSHTPC_T2_UK_London_Brunel_dc2_26
Last heartbeat2025-10-24 07:16:03
From worker nodeHostnamewn-a4-09
cpuinfoAMD EPYC 7452 32-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes4194304000 (4000 MiB)
Wall seconds limit171000 (47 hours)
GPU
Inner Apptainer?True
Job stateoutputting_failed
Started2025-10-24 04:52:12
Input filesvd-protodune:np02vd_raw_run040222_0222_df-s05-d2_dw_0_20251024T040457.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-10-24 07:16:03
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

-----------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                      8.6982e-05    0.000142878   0.000377589   0.000121693    5.659e-05       47     
produce:tpcrawdecoder:PDVDTPCReader               7.2783        18.8089       45.2503       18.2695       7.05871        47     
produce:triggerrawdecoder:PDVDTriggerReader4     0.305191      0.326659      0.496371      0.310838      0.0363946       47     
produce:pdvddaphne:DAPHNEReaderPDVD             0.000390199   0.000505176   0.00171233    0.00045424    0.000194899      47     
produce:ophit:OpHitFinder                       8.8312e-05    0.000175486   0.00105525    0.000142584   0.000140591      47     
produce:opflash:OpFlashFinderVerticalDrift      6.0422e-05    0.000110658   0.000651085   9.2462e-05    8.52181e-05      47     
produce:wclsdatavd:WireCellToolkit                36.621        55.9271       123.827       46.8331       19.2084        47     
produce:gaushit:GausHitFinder                     0.51473       1.02027       2.39104      0.961777      0.381377        47     
produce:nhitsfilter:NumberOfHitsFilter          0.000130474   0.000231074   0.000534652   0.000216035   7.8266e-05       47     
produce:reco3d:SpacePointSolver                   2.35296       10.187        39.4499       8.09001       7.18206        47     
produce:hitpdune:DisambigFromSpacePoints         0.0300341     0.159477       1.04002      0.102279      0.201025        47     
produce:pandora:StandardPandora                   5.49293       79.7441       1600.54       18.9054       242.113        47     
produce:pandoraTrack:LArPandoraTrackCreation     0.158698      0.669031       5.3707       0.446519      0.840853        47     
produce:pandoraGnocalo:GnocchiCalorimetry        0.0134546     0.0271036     0.064386      0.0257768    0.00988425       47     
[art]:TriggerResults:TriggerResultInserter      2.2031e-05    3.46113e-05   8.4902e-05    3.2441e-05    1.07383e-05      47     
end_path:out1:RootOutput                         7.04e-06     1.41159e-05   4.0371e-05    1.1821e-05    7.57391e-06      47     
end_path:out1:RootOutput(write)                   2.2671        3.22011       4.80554       3.20712      0.473856        47     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 6021.8 MB
  Peak resident set size usage (VmHWM): 4072.53 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040222_0222_df-s05-d2_dw_0_20251024T040457_reco_stage1_20251024T070648_keepup.root
\tHists: np02vd_raw_run040222_0222_df-s05-d2_dw_0_20251024T040457_reco_stage1_20251024T070648_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040222_0222_df-s05-d2_dw_0_20251024T040457_reco_stage1_20251024T070648_keepup.root
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
    conn = connection.create_connection(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
    raise err
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
    sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
    conn = self._new_conn()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
    raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x1484b21f1520>: Failed to establish a new connection: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040222_0222_df-s05-d2_dw_0_20251024T040457.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x1484b21f1520>: Failed to establish a new connection: [Errno 110] Connection timed out'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040222_0222_df-s05-d2_dw_0_20251024T040457.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x1484b21f1520>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata
justIN time: 2025-11-04 01:56:58 UTC       justIN version: 01.05.01