Jobsub ID 241644.0@dunegpschedd01.fnal.gov
| Jobsub ID | 241644.0@dunegpschedd01.fnal.gov |
| Workflow ID | 9373 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-11-01 11:46:12 |
| Site | NL_NIKHEF |
| Entry | VIRGO_NL_NIKHEF_klomp |
| Last heartbeat | 2025-11-01 12:21:24 |
| From worker node | Hostname | wn-sate-050.farm.nikhef.nl |
| cpuinfo | AMD EPYC 7551P 32-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-11-01 11:47:40 |
| Input files | vd-protodune:np02vd_raw_run040266_0056_df-s04-d1_dw_0_20251024T224555.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-11-01 12:21:24 |
| Saved logs | justin-logs:241644.0-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
with 8
[13:16:08.409] D [ glue ] frame sink sees EOS
[13:16:08.409] D [ pgraph ] <Pgrapher:> graph execution complete
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::OmnibusSigProc : 22.51 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::OmnibusSigProc : 8.2 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::OmnibusSigProc : 8.16 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::OmnibusSigProc : 8.14 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::OmnibusSigProc : 8.11 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::OmnibusSigProc : 8.09 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::OmnibusSigProc : 7.52 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::OmnibusSigProc : 7.5 sec
[13:16:08.409] I [ timer ] Timer: WireCell::Aux::Resampler : 0.26 sec
[13:16:08.409] I [ timer ] Timer: WireCell::Aux::Resampler : 0.26 sec
[13:16:08.409] I [ timer ] Timer: WireCell::Aux::Resampler : 0.25 sec
[13:16:08.409] I [ timer ] Timer: WireCell::Aux::Resampler : 0.25 sec
[13:16:08.409] I [ timer ] Timer: WireCell::Gen::FrameFanin : 0.03 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::ChannelSelector : 0.02 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::ChannelSelector : 0.01 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::ChannelSelector : 0 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::ChannelSelector : 0 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::ChannelSelector : 0 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::ChannelSelector : 0 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::ChannelSelector : 0 sec
[13:16:08.409] I [ timer ] Timer: WireCell::Gen::DumpFrames : 0 sec
[13:16:08.409] I [ timer ] Timer: WireCell::SigProc::ChannelSelector : 0 sec
[13:16:08.409] I [ timer ] Timer: WireCell::Gen::Retagger : 0 sec
[13:16:08.409] I [ timer ] Timer: WireCell::Gen::FrameFanout : 0 sec
[13:16:08.409] I [ timer ] Timer: wcls::RawFrameSource : 0 sec
[13:16:08.409] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[13:16:08.409] I [ timer ] Timer: Total node execution : 79.3099999986589 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 45262 traces tagged "gauss"
FrameSaver: q=2.2551e+07 n=1176010 tag=gauss
wclsFrameSaver: saving 56835 traces tagged "wiener"
FrameSaver: q=2.4144e+07 n=1147624 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 24387 XUs and 25750 XVs -> 2162 XUVs
C:0 T:1 39297 XUs and 44006 XVs -> 3720 XUVs
C:0 T:2 414 XUs and 472 XVs -> 13 XUVs
C:0 T:3 938 XUs and 1310 XVs -> 51 XUVs
C:0 T:4 645 XUs and 607 XVs -> 82 XUVs
C:0 T:5 1399 XUs and 1152 XVs -> 116 XUVs
C:0 T:6 183 XUs and 308 XVs -> 10 XUVs
C:0 T:7 599 XUs and 795 XVs -> 42 XUVs
C:0 T:8 214 XUs and 310 XVs -> 9 XUVs
C:0 T:9 1388 XUs and 1394 XVs -> 62 XUVs
C:0 T:10 449 XUs and 702 XVs -> 42 XUVs
C:0 T:11 745 XUs and 1106 XVs -> 20 XUVs
C:0 T:12 365 XUs and 663 XVs -> 19 XUVs
C:0 T:13 731 XUs and 1467 XVs -> 72 XUVs
C:0 T:14 309 XUs and 498 XVs -> 18 XUVs
C:0 T:15 334 XUs and 614 XVs -> 26 XUVs
6464 XUVs total
2072 collection wire objects
6464 potential space points
Neighbour search...
269884 tests to find 62172 neighbours
Iterating with no regularization...
Begin: 1.13261e+11
0 1.02664e+11
1 1.02023e+11
2 1.01996e+11
Now with regularization...
Begin: 1.00996e+11
0 1.00992e+11
RawFrameSource: got 12288 raw::RawDigit objects
input nticks=8000 keeping as is
[13:19:21.891] D [ main ] executing 1 apps, thread limit 0:
[13:19:21.891] D [ main ] executing 1 apps, thread limit 0:
[13:19:21.891] D [ main ] executing app: "Pgrapher"
[13:19:21.891] D [ pgraph ] <Pgrapher:> executing graph
[13:19:21.891] D [ pgraph ] executing with 26 nodes
[13:19:21.892] D [ glue ] <FrameFanout:nfsp> call=24: input: frame: ident=10405 time=46 tick=512 with 12288 traces. frame tags:[ "orig" ] 0 tagged trace sets:[ ] cmm:[ ] output 0: frame: ident=10405 time=46 tick=512 with 12288 traces. frame tags:[ "orig0" ] 0 tagged trace sets:[ ] cmm:[ ] output 1: frame: ident=10405 time=46 tick=512 with 12288 traces. frame tags:[ "orig1" ] 0 tagged trace sets:[ ] cmm:[ ] output 2: frame: ident=10405 time=46 tick=512 with 12288 traces. frame tags:[ "orig2" ] 0 tagged trace sets:[ ] cmm:[ ] output 3: frame: ident=10405 time=46 tick=512 with 12288 traces. frame tags:[ "orig3" ] 0 tagged trace sets:[ ] cmm:[ ] output 4: frame: ident=10405 time=46 tick=512 with 12288 traces. frame tags:[ "orig4" ] 0 tagged trace sets:[ ] cmm:[ ] output 5: frame: ident=10405 time=46 tick=512 with 12288 traces. frame tags:[ "orig5" ] 0 tagged trace sets:[ ] cmm:[ ] output 6: frame: ident=10405 time=46 tick=512 with 12288 traces. frame tags:[ "orig6" ] 0 tagged trace sets:[ ] cmm:[ ] output 7: frame: ident=10405 time=46 tick=512 with 12288 traces. frame tags:[ "orig7" ] 0 tagged trace sets:[ ] cmm:[ ]
[13:19:21.893] W [ glue ] <ChannelSelector:chsel7> Untagged summary not supported, summary will be dropped.
[13:19:21.893] D [ glue ] <ChannelSelector:chsel7> input frame: ident=10405 time=46 tick=512 with 12288 traces. frame tags:[ "orig7" ] 0 tagged trace sets:[ ] cmm:[ ] output: frame: ident=10405 time=46 tick=512 with 1536 traces. frame tags:[ "orig7" ] 0 tagged trace sets:[ ] cmm:[ ]
[13:19:21.893] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=24 input frame: frame: ident=10405 time=46 tick=512 with 1536 traces. frame tags:[ "orig7" ] 0 tagged trace sets:[ ] cmm:[ ]
[13:19:21.893] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=24 init nticks=8000 tbinmin=0 tbinmax=8000
[13:19:21.922] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=24 load plane index: 0, ntraces=1536, input bad regions: 0
[13:19:23.863] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=24 load plane index: 1, ntraces=1536, input bad regions: 0
[13:19:25.696] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=24 load plane index: 2, ntraces=1536, input bad regions: 0
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 6.8509e-05 141.675 273.787 131.262 62.1519 13
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 5.869e-05 0.000182818 0.00144362 6.5543e-05 0.000365431 13
produce:tpcrawdecoder:PDVDTPCReader 12.4422 13.1188 14.9677 12.7862 0.79319 13
produce:triggerrawdecoder:PDVDTriggerReader4 0.512047 0.537348 0.565629 0.537641 0.0150852 13
produce:pdvddaphne:DAPHNEReaderPDVD 0.000382369 0.000415366 0.000696119 0.000396375 8.139e-05 13
produce:ophit:OpHitFinder 6.1085e-05 0.00010314 0.000481426 7.1094e-05 0.000109429 13
produce:opflash:OpFlashFinderVerticalDrift 4.8672e-05 7.40375e-05 0.00030369 5.3701e-05 6.6433e-05 13
produce:wclsdatavd:WireCellToolkit 52.9376 74.936 113.404 69.7184 16.9786 12
produce:gaushit:GausHitFinder 0.828089 1.32276 1.84569 1.26835 0.25085 12
produce:nhitsfilter:NumberOfHitsFilter 0.000234541 0.000312871 0.000514477 0.00028743 7.19695e-05 12
produce:reco3d:SpacePointSolver 7.87 12.9388 19.3678 12.8565 2.73119 12
produce:hitpdune:DisambigFromSpacePoints 0.118534 0.201854 0.326339 0.200441 0.0601245 12
produce:pandora:StandardPandora 13.4863 43.7846 156.882 30.5026 37.5613 12
produce:pandoraTrack:LArPandoraTrackCreation 0.634591 1.36931 2.60404 1.23556 0.620416 12
produce:pandoraGnocalo:GnocchiCalorimetry 0.029512 0.037506 0.054567 0.0355424 0.00712306 12
[art]:TriggerResults:TriggerResultInserter 2.2232e-05 4.07958e-05 7.5963e-05 3.91585e-05 1.25754e-05 12
end_path:out1:RootOutput 3.938e-06 7.96342e-06 2.3755e-05 6.247e-06 5.34211e-06 12
end_path:out1:RootOutput(write) 4.48564 5.12171 5.89604 5.09597 0.39552 12
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 8589.8 MB
Peak resident set size usage (VmHWM): 6701.35 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 01-Nov-2025 13:21:01 CET ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- BadAlloc BEGIN
A bad_alloc exception was thrown while processing module WireCellToolkit/wclsdatavd run: 40266 subRun: 1 event: 10405
The job has probably exhausted the virtual memory available to the process.
---- BadAlloc END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 