justIN           Dashboard       Workflows       Jobs       AWT       Sites       Storages       Docs       Login

Jobsub ID 241759.15@dunegpschedd01.fnal.gov

Jobsub ID241759.15@dunegpschedd01.fnal.gov
Workflow ID9517
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors2
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-11-01 19:44:38
SiteNL_SURFsara
EntryDUNE_SurfSARA_arc03
Last heartbeat2025-11-01 22:26:15
From worker nodeHostnamewn-da-03.gina.surf.nl
cpuinfoAMD EPYC 7702P 64-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors2
RSS bytes4194304000 (4000 MiB)
Wall seconds limit129600 (36 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2025-11-01 21:02:15
Input filesvd-protodune:np02vd_raw_run040346_0585_df-s04-d0_dw_0_20251101T200053.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-11-01 22:26:15
Saved logsjustin-logs:241759.15-dunegpschedd01.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

7203       16.4777       11.2488       2.45372        22     
produce:hitpdune:DisambigFromSpacePoints         0.113617       0.19172      0.339311      0.186496      0.0632374       22     
produce:pandora:StandardPandora                   16.722        31.0714       76.4838       26.6356       15.5717        22     
produce:pandoraTrack:LArPandoraTrackCreation     0.479178       1.1885        2.34106       1.11104      0.472574        22     
produce:pandoraGnocalo:GnocchiCalorimetry        0.0257411     0.0338148     0.0470188      0.0335      0.00564179       22     
[art]:TriggerResults:TriggerResultInserter      1.8505e-05    4.49708e-05    0.0001579    4.6428e-05    2.85718e-05      23     
end_path:out1:RootOutput                         4.268e-06    9.37083e-06   3.9204e-05     5.912e-06    7.45571e-06      23     
end_path:out1:RootOutput(write)                   3.64675       4.17564       6.61487       3.9996       0.579405        23     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 9865.39 MB
  Peak resident set size usage (VmHWM): 7831.61 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040346_0585_df-s04-d0_dw_0_20251101T200053_reco_stage1_20251101T221500_keepup.root
\tHists: np02vd_raw_run040346_0585_df-s04-d0_dw_0_20251101T200053_reco_stage1_20251101T221501_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040346_0585_df-s04-d0_dw_0_20251101T200053_reco_stage1_20251101T221500_keepup.root
Ran successfully
{
  "name": "np02vd_raw_run040346_0585_df-s04-d0_dw_0_20251101T200053_reco_stage1_20251101T221500_keepup.root",
  "namespace": "vd-protodune-det-reco",
  "metadata": {
    "core.file_format": "artroot",
    "core.application.name": "reco",
    "core.application.family": "dunesw",
    "core.application.version": "v10_11_00d00",
    "core.data_tier": "full-reconstructed",
    "dune.config_file": "standard_reco_stage1_protodunevd_keepup_all.fcl",
    "dune.campaign": "vd-protodune-reco-keepup-v0",
    "core.start_time": 1762035302.0,
    "core.end_time": 1762035302.0,
    "core.events": [
      53956,
      53960,
      53964,
      53968,
      53972,
      53976,
      53980,
      53984,
      53988,
      53992,
      53996,
      54000,
      54004,
      54008,
      54012,
      54016,
      54020,
      54024,
      54028,
      54032,
      54036,
      54040,
      54044
    ],
    "core.event_count": 23,
    "core.first_event_number": 53956,
    "core.last_event_number": 54044,
    "core.data_stream": "cosmics",
    "core.file_content_status": "good",
    "core.file_type": "detector",
    "core.run_type": "vd-protodune",
    "core.runs": [
      40346
    ],
    "core.runs_subruns": [
      4034600001
    ],
    "dune.daq_test": false,
    "retention.status": "active",
    "retention.class": "physics"
  },
  "parents": [
    {
      "did": "vd-protodune:np02vd_raw_run040346_0585_df-s04-d0_dw_0_20251101T200053.hdf5"
    }
  ]
}Forming hist metadata
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 411, in connect
    self.sock = ssl_wrap_socket(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/ssl_.py", line 449, in ssl_wrap_socket
    ssl_sock = _ssl_wrap_socket_impl(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/ssl_.py", line 493, in _ssl_wrap_socket_impl
    return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 501, in wrap_socket
    return self.sslsocket_class._create(
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1041, in _create
    self.do_handshake()
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1310, in do_handshake
    self._sslobj.do_handshake()
socket.timeout: _ssl.c:1112: The handshake operation timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 532, in increment
    raise six.reraise(type(error), error, _stacktrace)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/packages/six.py", line 770, in reraise
    raise value
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 385, in _make_request
    self._raise_timeout(err=e, url=url, timeout_value=conn.timeout)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 336, in _raise_timeout
    raise ReadTimeoutError(
urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 529, in send
    raise ReadTimeout(e, request=request)
requests.exceptions.ReadTimeout: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)
Error in hist metadata
justIN time: 2025-11-04 01:30:54 UTC       justIN version: 01.05.01