Jobsub ID 242119.1@dunegpschedd01.fnal.gov
| Jobsub ID | 242119.1@dunegpschedd01.fnal.gov |
| Workflow ID | 9531 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 2 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-11-03 00:06:10 |
| Site | UK_Oxford |
| Entry | DUNE_UK_SGrid_Oxford_arc01 |
| Last heartbeat | 2025-11-03 00:30:35 |
| From worker node | Hostname | t2wn174.physics.ox.ac.uk |
| cpuinfo | AMD EPYC 9655 96-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 2 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 257400 (71 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-11-03 00:07:49 |
| Input files | vd-protodune:np02vd_raw_run040346_2467_df-s04-d2_dw_0_20251102T223459.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-11-03 00:30:35 |
| Saved logs | justin-logs:242119.1-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
0:28:22.696] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[00:28:22.696] I [ timer ] Timer: Total node execution : 55.200000466778874 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 58817 traces tagged "gauss"
FrameSaver: q=1.49325e+07 n=1250686 tag=gauss
wclsFrameSaver: saving 73459 traces tagged "wiener"
FrameSaver: q=1.60186e+07 n=1198208 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 1104 XUs and 1278 XVs -> 24 XUVs
C:0 T:1 1223 XUs and 763 XVs -> 30 XUVs
C:0 T:2 1614 XUs and 1415 XVs -> 59 XUVs
C:0 T:3 368 XUs and 546 XVs -> 12 XUVs
C:0 T:4 5656 XUs and 7627 XVs -> 429 XUVs
C:0 T:5 5495 XUs and 5266 XVs -> 228 XUVs
C:0 T:6 3071 XUs and 2309 XVs -> 86 XUVs
C:0 T:7 1851 XUs and 2224 XVs -> 98 XUVs
C:0 T:8 1598 XUs and 2805 XVs -> 96 XUVs
C:0 T:9 3278 XUs and 2927 XVs -> 380 XUVs
C:0 T:10 610 XUs and 1008 XVs -> 44 XUVs
C:0 T:11 1158 XUs and 997 XVs -> 127 XUVs
C:0 T:12 1650 XUs and 2335 XVs -> 137 XUVs
C:0 T:13 2369 XUs and 2219 XVs -> 125 XUVs
C:0 T:14 739 XUs and 954 XVs -> 45 XUVs
C:0 T:15 783 XUs and 698 XVs -> 49 XUVs
1969 XUVs total
1488 collection wire objects
1969 potential space points
Neighbour search...
33295 tests to find 14178 neighbours
Iterating with no regularization...
Begin: 2.23483e+10
0 2.22739e+10
1 2.22672e+10
Now with regularization...
Begin: 2.21346e+10
0 2.21345e+10
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Mon Nov 3 00:29:44 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/b3/45/np02vd_raw_run040346_2467_df-s04-d2_dw_0_20251102T223459.hdf5', file descriptor = 24, errno = 19, error message = 'No such device', buf = 0x31ce8240, total read size = 885672, bytes this sub-read = 885672, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 9.8048e-05 113.654 158.792 128.079 40.8965 11
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 8.9926e-05 0.000126524 0.000345423 9.8048e-05 7.07497e-05 11
produce:tpcrawdecoder:PDVDTPCReader 12.8621 19.5525 41.5203 14.1745 9.6829 10
produce:triggerrawdecoder:PDVDTriggerReader4 0.556512 0.721925 1.93098 0.592052 0.403307 10
produce:pdvddaphne:DAPHNEReaderPDVD 0.000432123 0.000579527 0.00120713 0.000513818 0.000217623 10
produce:ophit:OpHitFinder 9.8529e-05 0.000227787 0.000978139 0.000144478 0.000251693 10
produce:opflash:OpFlashFinderVerticalDrift 5.5274e-05 0.000140654 0.000524413 0.000103081 0.000130343 10
produce:wclsdatavd:WireCellToolkit 44.6933 58.3829 79.42 56.6226 9.55634 10
produce:gaushit:GausHitFinder 1.01185 1.28496 1.74971 1.13101 0.261685 10
produce:nhitsfilter:NumberOfHitsFilter 0.000206172 0.000302185 0.000516431 0.000290264 8.63594e-05 10
produce:reco3d:SpacePointSolver 8.49271 12.3562 17.2098 12.1892 2.90842 10
produce:hitpdune:DisambigFromSpacePoints 0.135356 0.200574 0.361084 0.18345 0.0659412 10
produce:pandora:StandardPandora 15.7248 26.6491 41.2205 25.8174 8.42132 10
produce:pandoraTrack:LArPandoraTrackCreation 0.54475 1.02722 1.56645 0.969726 0.343683 10
produce:pandoraGnocalo:GnocchiCalorimetry 0.0238286 0.036516 0.0498234 0.0360656 0.00749261 10
[art]:TriggerResults:TriggerResultInserter 3.9009e-05 6.99466e-05 0.000154463 5.93595e-05 3.06889e-05 10
end_path:out1:RootOutput 8.673e-06 1.82886e-05 4.8103e-05 1.5619e-05 1.03258e-05 10
end_path:out1:RootOutput(write) 4.44566 4.73871 5.7032 4.59045 0.355475 10
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5069.86 MB
Peak resident set size usage (VmHWM): 2886.16 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 03-Nov-2025 00:29:44 GMT ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 40346 subRun: 1 event: 227770
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 