Jobsub ID 242471.29@dunegpschedd01.fnal.gov
| Jobsub ID | 242471.29@dunegpschedd01.fnal.gov |
| Workflow ID | 9538 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 2 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-11-03 17:53:07 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc01 |
| Last heartbeat | 2025-11-03 19:34:50 |
| From worker node | Hostname | wn-lb-01.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 2 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | outputting_failed |
| Started | 2025-11-03 17:53:52 |
| Input files | vd-protodune:np02vd_raw_run040347_0000_df-s04-d2_dw_0_20251103T172821.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-11-03 19:34:50 |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
--------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.2738e-05 9.68626e-05 0.000264236 8.73415e-05 3.6786e-05 24
produce:tpcrawdecoder:PDVDTPCReader 58.9233 93.1198 132.384 90.9459 19.2698 24
produce:triggerrawdecoder:PDVDTriggerReader4 0.552068 0.791085 1.98075 0.694701 0.290977 24
produce:pdvddaphne:DAPHNEReaderPDVD 0.00034057 0.000392672 0.000752849 0.0003673 8.20933e-05 24
produce:ophit:OpHitFinder 7.6255e-05 0.00011437 0.000585597 8.8628e-05 9.91252e-05 24
produce:opflash:OpFlashFinderVerticalDrift 5.1698e-05 7.40827e-05 0.000358509 6.0105e-05 6.01401e-05 24
produce:wclsdatavd:WireCellToolkit 77.5521 99.4755 143.696 94.1169 15.0449 24
produce:gaushit:GausHitFinder 0.957199 1.28042 1.93557 1.25614 0.232144 24
produce:nhitsfilter:NumberOfHitsFilter 0.000164047 0.000324499 0.000675893 0.000257045 0.000138212 24
produce:reco3d:SpacePointSolver 7.29764 13.5146 23.8303 12.113 4.01579 24
produce:hitpdune:DisambigFromSpacePoints 0.101899 0.195522 0.429913 0.163108 0.0767416 24
produce:pandora:StandardPandora 12.4361 33.0673 209.333 23.1986 38.1419 24
produce:pandoraTrack:LArPandoraTrackCreation 0.36322 1.24402 2.50878 1.20626 0.527587 24
produce:pandoraGnocalo:GnocchiCalorimetry 0.0185471 0.0326453 0.0454447 0.0323494 0.00695749 24
[art]:TriggerResults:TriggerResultInserter 2.8743e-05 4.68785e-05 0.000136414 4.01895e-05 2.19196e-05 24
end_path:out1:RootOutput 6.69e-06 9.71379e-06 3.5513e-05 8.2225e-06 5.68398e-06 24
end_path:out1:RootOutput(write) 4.96178 5.31198 6.33792 5.21857 0.321828 24
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5231.34 MB
Peak resident set size usage (VmHWM): 3205.71 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040347_0000_df-s04-d2_dw_0_20251103T172821_reco_stage1_20251103T193410_keepup.root
\tHists: np02vd_raw_run040347_0000_df-s04-d2_dw_0_20251103T172821_reco_stage1_20251103T193411_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040347_0000_df-s04-d2_dw_0_20251103T172821_reco_stage1_20251103T193410_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
conn = connection.create_connection(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
raise err
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
sock.connect(sa)
ConnectionRefusedError: [Errno 111] Connection refused
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
conn = self._new_conn()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x154ce7bb1520>: Failed to establish a new connection: [Errno 111] Connection refused
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040347_0000_df-s04-d2_dw_0_20251103T172821.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x154ce7bb1520>: Failed to establish a new connection: [Errno 111] Connection refused'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040347_0000_df-s04-d2_dw_0_20251103T172821.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x154ce7bb1520>: Failed to establish a new connection: [Errno 111] Connection refused'))
Error in reco metadata 