Jobsub ID 242471.53@dunegpschedd01.fnal.gov
| Jobsub ID | 242471.53@dunegpschedd01.fnal.gov |
| Workflow ID | 9538 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 2 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-11-03 17:53:07 |
| Site | UK_QMUL |
| Entry | DUNE_UK_London_QMUL_arcce02 |
| Last heartbeat | 2025-11-03 19:42:52 |
| From worker node | Hostname | cn065.htc.esc.qmul |
| cpuinfo | Intel(R) Xeon(R) Gold 6248R CPU @ 3.00GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 2 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | outputting_failed |
| Started | 2025-11-03 17:54:23 |
| Input files | vd-protodune:np02vd_raw_run040346_3740_df-s04-d0_dw_0_20251103T164819.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-11-03 19:42:52 |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
--------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 9.8593e-05 0.000128977 0.000262985 0.00012338 3.33987e-05 23
produce:tpcrawdecoder:PDVDTPCReader 41.6832 91.9502 170.72 91.0927 23.1822 23
produce:triggerrawdecoder:PDVDTriggerReader4 0.503791 0.647377 0.954084 0.610034 0.12095 23
produce:pdvddaphne:DAPHNEReaderPDVD 0.000544785 0.000745423 0.00125881 0.000665617 0.000188639 23
produce:ophit:OpHitFinder 0.000128566 0.000204982 0.001013 0.000169352 0.000174076 23
produce:opflash:OpFlashFinderVerticalDrift 8.4416e-05 0.000163088 0.000688049 0.000136327 0.000115339 23
produce:wclsdatavd:WireCellToolkit 68.205 112.672 208.476 103.96 39.2192 23
produce:gaushit:GausHitFinder 0.871261 1.52898 2.7383 1.51131 0.4653 23
produce:nhitsfilter:NumberOfHitsFilter 0.000332649 0.000579163 0.00108725 0.00056047 0.000161156 23
produce:reco3d:SpacePointSolver 5.91287 12.1207 18.3523 11.5325 2.97236 23
produce:hitpdune:DisambigFromSpacePoints 0.114465 0.278534 0.510888 0.262396 0.104098 23
produce:pandora:StandardPandora 12.2777 51.3539 155.302 35.0441 36.3393 23
produce:pandoraTrack:LArPandoraTrackCreation 0.850085 3.52884 6.3461 3.45249 1.6008 23
produce:pandoraGnocalo:GnocchiCalorimetry 0.0198587 0.0426187 0.0757483 0.0374296 0.014256 23
[art]:TriggerResults:TriggerResultInserter 4.518e-05 7.33852e-05 0.000229529 6.2648e-05 3.62467e-05 23
end_path:out1:RootOutput 7.629e-06 1.65016e-05 8.0986e-05 1.3085e-05 1.40723e-05 23
end_path:out1:RootOutput(write) 3.36333 4.67314 6.70003 4.04461 1.0109 23
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5733.52 MB
Peak resident set size usage (VmHWM): 3708.34 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040346_3740_df-s04-d0_dw_0_20251103T164819_reco_stage1_20251103T194227_keepup.root
\tHists: np02vd_raw_run040346_3740_df-s04-d0_dw_0_20251103T164819_reco_stage1_20251103T194228_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040346_3740_df-s04-d0_dw_0_20251103T164819_reco_stage1_20251103T194227_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
conn = connection.create_connection(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
raise err
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
sock.connect(sa)
ConnectionRefusedError: [Errno 111] Connection refused
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
conn = self._new_conn()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x1549533f1520>: Failed to establish a new connection: [Errno 111] Connection refused
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040346_3740_df-s04-d0_dw_0_20251103T164819.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x1549533f1520>: Failed to establish a new connection: [Errno 111] Connection refused'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040346_3740_df-s04-d0_dw_0_20251103T164819.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x1549533f1520>: Failed to establish a new connection: [Errno 111] Connection refused'))
Error in reco metadata 