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Jobsub ID 242471.54@dunegpschedd01.fnal.gov

Jobsub ID242471.54@dunegpschedd01.fnal.gov
Workflow ID9538
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors2
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-11-03 17:53:07
SiteUK_Manchester
EntryUBoone_T2_UK_Manchester_ce01
Last heartbeat2025-11-03 19:39:42
From worker nodeHostnamewn2205250.tier2.hep.manchester.ac.uk
cpuinfoAMD EPYC 7513 32-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors2
RSS bytes4194304000 (4000 MiB)
Wall seconds limit257400 (71 hours)
GPU
Inner Apptainer?True
Job stateoutputting_failed
Started2025-11-03 17:54:08
Input filesvd-protodune:np02vd_raw_run040347_0002_df-s04-d2_dw_0_20251103T173001.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-11-03 19:39:42
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

--------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                      0.00010604    0.000168785   0.000313379   0.000157928   4.9889e-05       23     
produce:tpcrawdecoder:PDVDTPCReader               24.3323       25.7325       28.9361       25.2606       1.31592        23     
produce:triggerrawdecoder:PDVDTriggerReader4     0.685963      0.733064      0.842442      0.720857      0.0403224       23     
produce:pdvddaphne:DAPHNEReaderPDVD             0.000432815   0.000639058   0.00114401    0.000607002   0.000165243      23     
produce:ophit:OpHitFinder                       0.000105899   0.000257802   0.00103396    0.00022309     0.0001885       23     
produce:opflash:OpFlashFinderVerticalDrift      7.3458e-05    0.000178759   0.000657447   0.000140505   0.00012399       23     
produce:wclsdatavd:WireCellToolkit                74.6037       103.498       152.843       95.1888       24.227         23     
produce:gaushit:GausHitFinder                     1.07708       1.99789       2.82128        2.055       0.435226        23     
produce:nhitsfilter:NumberOfHitsFilter          0.000373583   0.000795449    0.0017652    0.000717661    0.0003423       23     
produce:reco3d:SpacePointSolver                   8.1754        17.129        32.1113       16.2615       5.34366        23     
produce:hitpdune:DisambigFromSpacePoints         0.137334      0.383426       1.35594      0.335042      0.248991        23     
produce:pandora:StandardPandora                   19.2528       110.529       1048.76       59.7091       205.957        23     
produce:pandoraTrack:LArPandoraTrackCreation      0.98374       3.85264       8.68117       3.74453       1.93035        23     
produce:pandoraGnocalo:GnocchiCalorimetry        0.0308082     0.0643645     0.0964615     0.0623494     0.0142748       23     
[art]:TriggerResults:TriggerResultInserter      6.6775e-05    0.00012259    0.000279065   0.000110057   3.94575e-05      23     
end_path:out1:RootOutput                        1.3886e-05    2.74803e-05   8.3787e-05    2.4145e-05    1.37818e-05      23     
end_path:out1:RootOutput(write)                   5.19267       6.33425       7.41243       6.23915      0.539157        23     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 5843.32 MB
  Peak resident set size usage (VmHWM): 3760.11 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040347_0002_df-s04-d2_dw_0_20251103T173001_reco_stage1_20251103T193913_keepup.root
\tHists: np02vd_raw_run040347_0002_df-s04-d2_dw_0_20251103T173001_reco_stage1_20251103T193913_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040347_0002_df-s04-d2_dw_0_20251103T173001_reco_stage1_20251103T193913_keepup.root
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
    conn = connection.create_connection(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
    raise err
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
    sock.connect(sa)
ConnectionRefusedError: [Errno 111] Connection refused

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
    conn = self._new_conn()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
    raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x151246bf1520>: Failed to establish a new connection: [Errno 111] Connection refused

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040347_0002_df-s04-d2_dw_0_20251103T173001.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x151246bf1520>: Failed to establish a new connection: [Errno 111] Connection refused'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040347_0002_df-s04-d2_dw_0_20251103T173001.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x151246bf1520>: Failed to establish a new connection: [Errno 111] Connection refused'))
Error in reco metadata
justIN time: 2025-11-05 07:11:58 UTC       justIN version: 01.05.01