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Jobsub ID 242471.84@dunegpschedd01.fnal.gov

Jobsub ID242471.84@dunegpschedd01.fnal.gov
Workflow ID9538
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors2
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-11-03 17:53:07
SiteUK_Manchester
EntryUBoone_T2_UK_Manchester_ce02
Last heartbeat2025-11-03 19:51:09
From worker nodeHostnamewn1206081.tier2.hep.manchester.ac.uk
cpuinfoAMD EPYC 7702P 64-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors2
RSS bytes4194304000 (4000 MiB)
Wall seconds limit257400 (71 hours)
GPU
Inner Apptainer?True
Job stateoutputting_failed
Started2025-11-03 17:54:18
Input filesvd-protodune:np02vd_raw_run040346_3740_df-s04-d3_dw_0_20251103T164616.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-11-03 19:51:09
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

--------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                      9.3798e-05    0.000115839   0.000315826   0.000107714   4.30402e-05      23     
produce:tpcrawdecoder:PDVDTPCReader               78.0473       117.286       187.621       116.123       23.998         23     
produce:triggerrawdecoder:PDVDTriggerReader4     0.768458      0.950116       1.33255      0.957639      0.156768        23     
produce:pdvddaphne:DAPHNEReaderPDVD             0.000493862   0.000576607   0.00119763    0.000544518   0.00013622       23     
produce:ophit:OpHitFinder                       8.0382e-05    0.000139731   0.000914957   9.1653e-05    0.000168495      23     
produce:opflash:OpFlashFinderVerticalDrift      6.2638e-05    0.000102313   0.000532415   6.9822e-05    9.70988e-05      23     
produce:wclsdatavd:WireCellToolkit                87.3632       109.003       162.299       95.134        23.5043        23     
produce:gaushit:GausHitFinder                     1.32403       1.92214       3.14175       1.83792      0.394953        23     
produce:nhitsfilter:NumberOfHitsFilter          0.000473013   0.000729993    0.0011526    0.000691705   0.000187016      23     
produce:reco3d:SpacePointSolver                   11.3467       16.1086       27.1175       15.0772       4.12916        23     
produce:hitpdune:DisambigFromSpacePoints         0.150511      0.253514      0.507514       0.22637      0.0848775       23     
produce:pandora:StandardPandora                   26.9815       45.0918       115.066       38.3374       21.5966        23     
produce:pandoraTrack:LArPandoraTrackCreation     0.935062       2.20531       5.14181       1.9601        1.06562        23     
produce:pandoraGnocalo:GnocchiCalorimetry        0.0398869     0.0597946     0.0886715     0.0579901     0.0130645       23     
[art]:TriggerResults:TriggerResultInserter      2.8554e-05    7.4623e-05    0.000213884   7.2336e-05    3.58305e-05      23     
end_path:out1:RootOutput                         5.29e-06     1.21093e-05   4.6097e-05     1.056e-05    8.36574e-06      23     
end_path:out1:RootOutput(write)                   5.45367       6.66208       8.47392       6.56178      0.725521        23     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 5146.21 MB
  Peak resident set size usage (VmHWM): 3059.24 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040346_3740_df-s04-d3_dw_0_20251103T164616_reco_stage1_20251103T195034_keepup.root
\tHists: np02vd_raw_run040346_3740_df-s04-d3_dw_0_20251103T164616_reco_stage1_20251103T195034_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040346_3740_df-s04-d3_dw_0_20251103T164616_reco_stage1_20251103T195034_keepup.root
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
    conn = connection.create_connection(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
    raise err
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
    sock.connect(sa)
ConnectionRefusedError: [Errno 111] Connection refused

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
    conn = self._new_conn()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
    raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x150d209b1520>: Failed to establish a new connection: [Errno 111] Connection refused

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040346_3740_df-s04-d3_dw_0_20251103T164616.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x150d209b1520>: Failed to establish a new connection: [Errno 111] Connection refused'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040346_3740_df-s04-d3_dw_0_20251103T164616.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x150d209b1520>: Failed to establish a new connection: [Errno 111] Connection refused'))
Error in reco metadata
justIN time: 2025-11-05 07:13:36 UTC       justIN version: 01.05.01