Jobsub ID 242844.87@dunegpschedd01.fnal.gov
| Jobsub ID | 242844.87@dunegpschedd01.fnal.gov |
| Workflow ID | 9583 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-11-04 08:43:53 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc02 |
| Last heartbeat | 2025-11-04 11:28:54 |
| From worker node | Hostname | wn-lb-06.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-11-04 09:25:13 |
| Input files | vd-protodune:np02vd_raw_run040348_0018_df-s04-d0_dw_0_20251103T191950.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-11-04 11:28:54 |
| Saved logs | justin-logs:242844.87-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
========
Full event 148.423 277.54 1218.58 194.863 269.569 24
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.8687e-05 0.000105386 0.000249002 9.18075e-05 3.56748e-05 24
produce:tpcrawdecoder:PDVDTPCReader 19.9199 75.6688 125.056 79.5085 23.3174 24
produce:triggerrawdecoder:PDVDTriggerReader4 0.61229 0.76847 1.10733 0.75461 0.145408 24
produce:pdvddaphne:DAPHNEReaderPDVD 0.00030818 0.000382821 0.00066995 0.000372917 6.95308e-05 24
produce:ophit:OpHitFinder 7.3499e-05 0.000125971 0.000561558 0.000103385 9.43757e-05 24
produce:opflash:OpFlashFinderVerticalDrift 4.8954e-05 0.000104726 0.000422361 6.99195e-05 9.08932e-05 24
produce:wclsdatavd:WireCellToolkit 58.3564 86.5313 169.229 77.096 23.8866 24
produce:gaushit:GausHitFinder 0.638649 1.04261 3.14933 0.951558 0.467036 24
produce:nhitsfilter:NumberOfHitsFilter 0.000309572 0.000768129 0.00256499 0.000720802 0.000421724 24
produce:reco3d:SpacePointSolver 5.41541 12.655 50.1892 11.3704 8.3793 24
produce:hitpdune:DisambigFromSpacePoints 0.084663 0.203282 1.12766 0.142129 0.20932 24
produce:pandora:StandardPandora 11.1282 93.3662 1040.72 19.6586 248.995 24
produce:pandoraTrack:LArPandoraTrackCreation 0.511466 3.05856 24.558 1.91382 4.6341 24
produce:pandoraGnocalo:GnocchiCalorimetry 0.0157346 0.0373115 0.0932532 0.0333068 0.0158031 24
[art]:TriggerResults:TriggerResultInserter 3.259e-05 6.0019e-05 0.000187951 5.3149e-05 2.99159e-05 24
end_path:out1:RootOutput 7.151e-06 1.20695e-05 3.8689e-05 9.905e-06 7.60419e-06 24
end_path:out1:RootOutput(write) 3.66928 4.0685 5.47151 4.01412 0.362289 24
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 6856.09 MB
Peak resident set size usage (VmHWM): 4960.08 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040348_0018_df-s04-d0_dw_0_20251103T191950_reco_stage1_20251104T111748_keepup.root
\tHists: np02vd_raw_run040348_0018_df-s04-d0_dw_0_20251103T191950_reco_stage1_20251104T111748_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040348_0018_df-s04-d0_dw_0_20251103T191950_reco_stage1_20251104T111748_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/ssl_.py", line 449, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/ssl_.py", line 493, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1041, in _create
self.do_handshake()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1310, in do_handshake
self._sslobj.do_handshake()
socket.timeout: _ssl.c:1112: The handshake operation timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 532, in increment
raise six.reraise(type(error), error, _stacktrace)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/packages/six.py", line 770, in reraise
raise value
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 385, in _make_request
self._raise_timeout(err=e, url=url, timeout_value=conn.timeout)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 336, in _raise_timeout
raise ReadTimeoutError(
urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 529, in send
raise ReadTimeout(e, request=request)
requests.exceptions.ReadTimeout: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)
Error in reco metadata 