Jobsub ID 243803.46@dunegpschedd01.fnal.gov
| Jobsub ID | 243803.46@dunegpschedd01.fnal.gov |
| Workflow ID | 9647 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| Requested | Processors | 2 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-11-05 23:58:00 |
| Site | FR_CCIN2P3 |
| Entry | DUNE_FR_CCIN2P3_cccondorce01 |
| Last heartbeat | 2025-11-06 04:59:57 |
| From worker node | Hostname | ccwcondor0368 |
| cpuinfo | AMD EPYC 9334 32-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 2 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 106200 (29 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-11-05 23:58:44 |
| Input files | vd-protodune:np02vd_raw_run040385_0051_df-s04-d0_dw_0_20251105T225539.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-11-06 04:59:57 |
| Saved logs | justin-logs:243803.46-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
----------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 8.3567e-05 0.000135309 0.000295918 0.000126812 4.57122e-05 23
produce:tpcrawdecoder:PDVDTPCReader 5.29713 7.21808 16.7075 6.1911 3.02763 23
produce:triggerrawdecoder:PDVDTriggerReader4 0.0781577 0.0939911 0.136447 0.0919361 0.0132984 23
produce:pdvddaphne:DAPHNEReaderPDVD 0.000213133 0.000431228 0.000768084 0.000421929 0.000108994 23
produce:ophit:OpHitFinder 5.4543e-05 0.00019749 0.000927956 0.00014567 0.000195977 23
produce:opflash:OpFlashFinderVerticalDrift 4.1343e-05 9.61688e-05 0.00036329 7.5544e-05 6.50686e-05 23
produce:wclsdatavd:WireCellToolkit 46.6685 98.7957 189.052 90.1969 42.8357 23
produce:gaushit:GausHitFinder 0.821328 2.2176 6.24022 1.45339 1.67965 23
produce:nhitsfilter:NumberOfHitsFilter 0.000202657 0.000455247 0.00116945 0.000325894 0.000258212 23
produce:reco3d:SpacePointSolver 5.96997 28.8494 125.141 12.3791 34.4485 23
produce:hitpdune:DisambigFromSpacePoints 0.0899529 0.612547 2.72458 0.225357 0.756391 23
produce:pandora:StandardPandora 12.2495 621.559 9247.56 32.8049 1901.5 23
produce:pandoraTrack:LArPandoraTrackCreation 0.403061 3.10287 11.7397 1.53035 3.38986 23
produce:pandoraGnocalo:GnocchiCalorimetry 0.019501 0.0537984 0.163684 0.043663 0.0335319 23
[art]:TriggerResults:TriggerResultInserter 4.4778e-05 7.16532e-05 9.6867e-05 7.3621e-05 1.50326e-05 23
end_path:out1:RootOutput 9.144e-06 3.64644e-05 0.000480268 1.6105e-05 9.47206e-05 23
end_path:out1:RootOutput(write) 3.85539 5.37263 7.68457 5.09015 1.00863 23
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 9328.23 MB
Peak resident set size usage (VmHWM): 7206.33 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040385_0051_df-s04-d0_dw_0_20251105T225539_reco_stage1_20251106T045416_keepup.root
\tHists: np02vd_raw_run040385_0051_df-s04-d0_dw_0_20251105T225539_reco_stage1_20251106T045416_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040385_0051_df-s04-d0_dw_0_20251105T225539_reco_stage1_20251106T045416_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
conn = connection.create_connection(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
raise err
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
conn = self._new_conn()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x150d6b8f1520>: Failed to establish a new connection: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040385_0051_df-s04-d0_dw_0_20251105T225539.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x150d6b8f1520>: Failed to establish a new connection: [Errno 110] Connection timed out'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040385_0051_df-s04-d0_dw_0_20251105T225539.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x150d6b8f1520>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata 