Jobsub ID 256911.18@dunegpschedd02.fnal.gov
| Jobsub ID | 256911.18@dunegpschedd02.fnal.gov |
| Workflow ID | 10948 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 2 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-12-03 13:37:19 |
| Site | UK_Edinburgh |
| Entry | DUNE_UK_SGridECDF_ce1_multicore |
| Last heartbeat | 2025-12-03 16:11:16 |
| From worker node | Hostname | node2b07.ecdf.ed.ac.uk |
| cpuinfo | Intel(R) Xeon(R) Gold 6338 CPU @ 2.00GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 2 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-12-03 13:38:43 |
| Input files | vd-protodune:np02vd_raw_run041085_0134_df-s04-d0_dw_0_20251203T123901.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-12-03 16:11:16 |
| Saved logs | justin-logs:256911.18-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
.6184 49
produce:gaushit:GausHitFinder 0.508852 0.720684 1.89464 0.675465 0.214655 49
produce:nhitsfilter:NumberOfHitsFilter 0.000122671 0.000218342 0.000457554 0.000209707 5.78305e-05 49
produce:reco3d:SpacePointSolver 3.60036 6.87301 16.9846 6.55445 2.19275 48
produce:hitpdune:DisambigFromSpacePoints 0.0267104 0.0760833 0.263874 0.0696276 0.0351674 48
produce:pandora:StandardPandora 4.75201 21.9404 181.432 15.968 26.6905 48
produce:pandoraTrack:LArPandoraTrackCreation 0.111127 0.327325 1.0443 0.267614 0.165463 48
produce:pandoraGnocalo:GnocchiCalorimetry 0.00910247 0.0136132 0.0230457 0.0129833 0.00293832 48
[art]:TriggerResults:TriggerResultInserter 2.2168e-05 3.05426e-05 7.0207e-05 2.9574e-05 7.21505e-06 49
end_path:out1:RootOutput 2.927e-06 4.40084e-06 1.953e-05 4.024e-06 2.25949e-06 49
end_path:out1:RootOutput(write) 1.72238 2.03008 2.72625 1.98308 0.170577 49
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 6961 MB
Peak resident set size usage (VmHWM): 4851.8 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
[2025-12-03 16:06:41.244434 +0000][Debug ][JobMgr ][ 1146] Stopping the job manager...
[2025-12-03 16:06:41.246134 +0000][Debug ][JobMgr ][ 1146] Job manager stopped
[2025-12-03 16:06:41.246483 +0000][Debug ][TaskMgr ][ 1146] Stopping the task manager...
[2025-12-03 16:06:41.246714 +0000][Debug ][TaskMgr ][ 1146] Task manager stopped
[2025-12-03 16:06:41.247272 +0000][Debug ][Poller ][ 1146] Stopping the poller...
[2025-12-03 16:06:41.247767 +0000][Debug ][AsyncSock ][ 1146] [st-096-gg5007yi.cern.ch:1095.0] Closing the socket
[2025-12-03 16:06:41.247826 +0000][Debug ][Poller ][ 1146] <[::ffff:192.41.105.40]:42788><--><[::ffff:128.142.193.100]:1095> Removing socket from the poller
[2025-12-03 16:06:41.247910 +0000][Debug ][PostMaster ][ 1146] [st-096-gg5007yi.cern.ch:1095] Destroying stream
[2025-12-03 16:06:41.248014 +0000][Debug ][AsyncSock ][ 1146] [st-096-gg5007yi.cern.ch:1095.0] Closing the socket
Output files:
\tReco: np02vd_raw_run041085_0134_df-s04-d0_dw_0_20251203T123901_reco_stage1_20251203T160640_keepup.root
\tHists: np02vd_raw_run041085_0134_df-s04-d0_dw_0_20251203T123901_reco_stage1_20251203T160641_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run041085_0134_df-s04-d0_dw_0_20251203T123901_reco_stage1_20251203T160640_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
conn = connection.create_connection(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
raise err
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
conn = self._new_conn()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x153eb30f16a0>: Failed to establish a new connection: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run041085_0134_df-s04-d0_dw_0_20251203T123901.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x153eb30f16a0>: Failed to establish a new connection: [Errno 110] Connection timed out'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run041085_0134_df-s04-d0_dw_0_20251203T123901.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x153eb30f16a0>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata 