Jobsub ID 258787.40@dunegpschedd02.fnal.gov
| Jobsub ID | 258787.40@dunegpschedd02.fnal.gov |
| Workflow ID | 11074 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 2 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-12-07 13:43:17 |
| Site | UK_Edinburgh |
| Entry | DUNE_UK_SGridECDF_ce1_multicore |
| Last heartbeat | 2025-12-07 17:03:36 |
| From worker node | Hostname | node2b05.ecdf.ed.ac.uk |
| cpuinfo | Intel(R) Xeon(R) Gold 6338 CPU @ 2.00GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 2 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-12-07 13:45:06 |
| Input files | vd-protodune:np02vd_raw_run041215_5670_df-s04-d1_dw_0_20251207T125255.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-12-07 17:03:36 |
| Saved logs | justin-logs:258787.40-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
99 24
produce:gaushit:GausHitFinder 1.02327 1.4993 2.00022 1.42512 0.263575 24
produce:nhitsfilter:NumberOfHitsFilter 0.000237757 0.000338644 0.000503557 0.000298782 7.77988e-05 24
produce:reco3d:SpacePointSolver 5.43049 10.7018 19.6291 9.92736 3.34564 24
produce:hitpdune:DisambigFromSpacePoints 0.0895194 0.184598 0.385829 0.173436 0.0670819 24
produce:pandora:StandardPandora 16.1683 35.2364 103.156 29.5422 19.5075 24
produce:pandoraTrack:LArPandoraTrackCreation 0.327369 0.904565 3.16198 0.680465 0.595461 24
produce:pandoraGnocalo:GnocchiCalorimetry 0.0145199 0.0232744 0.0471278 0.0229054 0.00691675 24
[art]:TriggerResults:TriggerResultInserter 2.1003e-05 2.98462e-05 5.4374e-05 2.55045e-05 9.36523e-06 24
end_path:out1:RootOutput 3.605e-06 6.41025e-06 1.9033e-05 5.452e-06 2.94184e-06 24
end_path:out1:RootOutput(write) 3.77907 4.17257 4.99843 4.12093 0.321375 24
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5424.96 MB
Peak resident set size usage (VmHWM): 3404.84 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
[2025-12-07 16:56:32.242159 +0000][Debug ][JobMgr ][ 1148] Stopping the job manager...
[2025-12-07 16:56:32.242687 +0000][Debug ][JobMgr ][ 1148] Job manager stopped
[2025-12-07 16:56:32.242802 +0000][Debug ][TaskMgr ][ 1148] Stopping the task manager...
[2025-12-07 16:56:32.243220 +0000][Debug ][TaskMgr ][ 1148] Task manager stopped
[2025-12-07 16:56:32.243258 +0000][Debug ][Poller ][ 1148] Stopping the poller...
[2025-12-07 16:56:32.243401 +0000][Debug ][AsyncSock ][ 1148] [st-096-gg500la1.cern.ch:1095.0] Closing the socket
[2025-12-07 16:56:32.243707 +0000][Debug ][Poller ][ 1148] <[::ffff:192.41.105.38]:37454><--><[::ffff:128.142.193.12]:1095> Removing socket from the poller
[2025-12-07 16:56:32.243761 +0000][Debug ][PostMaster ][ 1148] [st-096-gg500la1.cern.ch:1095] Destroying stream
[2025-12-07 16:56:32.243830 +0000][Debug ][AsyncSock ][ 1148] [st-096-gg500la1.cern.ch:1095.0] Closing the socket
Output files:
\tReco: np02vd_raw_run041215_5670_df-s04-d1_dw_0_20251207T125255_reco_stage1_20251207T165631_keepup.root
\tHists: np02vd_raw_run041215_5670_df-s04-d1_dw_0_20251207T125255_reco_stage1_20251207T165632_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run041215_5670_df-s04-d1_dw_0_20251207T125255_reco_stage1_20251207T165631_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
conn = connection.create_connection(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
raise err
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
conn = self._new_conn()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x15131e7540d0>: Failed to establish a new connection: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run041215_5670_df-s04-d1_dw_0_20251207T125255.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x15131e7540d0>: Failed to establish a new connection: [Errno 110] Connection timed out'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run041215_5670_df-s04-d1_dw_0_20251207T125255.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x15131e7540d0>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata 