Jobsub ID 260464.1@dunegpschedd02.fnal.gov
| Jobsub ID | 260464.1@dunegpschedd02.fnal.gov |
| Workflow ID | 11076 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 2 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-12-10 19:05:16 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc01 |
| Last heartbeat | 2025-12-10 20:05:40 |
| From worker node | Hostname | wn-la-12.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 2 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-12-10 19:06:54 |
| Input files | vd-protodune:np02vd_raw_run041215_6909_df-s04-d1_dw_0_20251207T223123.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-12-10 20:05:40 |
| Saved logs | justin-logs:260464.1-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
imer ] Timer: WireCell::SigProc::ChannelSelector : 0 sec
[21:02:15.422] I [ timer ] Timer: WireCell::Gen::Retagger : 0 sec
[21:02:15.422] I [ timer ] Timer: WireCell::Gen::FrameFanout : 0 sec
[21:02:15.422] I [ timer ] Timer: wcls::RawFrameSource : 0 sec
[21:02:15.422] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[21:02:15.422] I [ timer ] Timer: Total node execution : 115.19000078365207 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 40582 traces tagged "gauss"
FrameSaver: q=1.47897e+07 n=1030101 tag=gauss
wclsFrameSaver: saving 50343 traces tagged "wiener"
FrameSaver: q=1.57822e+07 n=995994 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 11768 XUs and 18487 XVs -> 986 XUVs
C:0 T:1 361 XUs and 470 XVs -> 17 XUVs
C:0 T:2 1648 XUs and 2753 XVs -> 104 XUVs
C:0 T:3 2070 XUs and 3638 XVs -> 202 XUVs
C:0 T:4 1005 XUs and 958 XVs -> 58 XUVs
C:0 T:5 591 XUs and 699 XVs -> 35 XUVs
C:0 T:6 1052 XUs and 912 XVs -> 42 XUVs
C:0 T:7 1154 XUs and 596 XVs -> 49 XUVs
C:0 T:8 38 XUs and 11 XVs -> 0 XUVs
C:0 T:9 2 XUs and 1 XVs -> 0 XUVs
C:0 T:10 7 XUs and 6 XVs -> 0 XUVs
C:0 T:11 14 XUs and 26 XVs -> 0 XUVs
C:0 T:12 1097 XUs and 1499 XVs -> 56 XUVs
C:0 T:13 514 XUs and 565 XVs -> 26 XUVs
C:0 T:14 632 XUs and 749 XVs -> 27 XUVs
C:0 T:15 3552 XUs and 2762 XVs -> 145 XUVs
1747 XUVs total
1181 collection wire objects
1747 potential space points
Neighbour search...
43871 tests to find 12720 neighbours
Iterating with no regularization...
Begin: 1.25914e+10
0 1.23484e+10
1 1.23377e+10
Now with regularization...
Begin: 1.22985e+10
0 1.22985e+10
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Wed Dec 10 21:05:03 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/55/92/np02vd_raw_run041215_6909_df-s04-d1_dw_0_20251207T223123.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x15ce7770, total read size = 907272, bytes this sub-read = 907272, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 7.4382e-05 301.716 421.83 330.367 103.996 11
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.1086e-05 9.4648e-05 0.000230956 7.4952e-05 4.46031e-05 11
produce:tpcrawdecoder:PDVDTPCReader 123.352 143.491 174.616 137.844 16.6946 10
produce:triggerrawdecoder:PDVDTriggerReader4 0.348633 0.472616 0.753687 0.428782 0.120112 10
produce:pdvddaphne:DAPHNEReaderPDVD 0.00034043 0.000526402 0.000898805 0.000390698 0.000203764 10
produce:ophit:OpHitFinder 7.6595e-05 0.000136641 0.000566368 8.41465e-05 0.000143767 10
produce:opflash:OpFlashFinderVerticalDrift 5.5543e-05 0.000109472 0.000360999 6.2828e-05 9.06897e-05 10
produce:wclsdatavd:WireCellToolkit 87.7702 118.501 155.956 117.862 16.8312 10
produce:gaushit:GausHitFinder 1.11543 1.52491 1.97142 1.4415 0.244118 10
produce:nhitsfilter:NumberOfHitsFilter 0.000195394 0.00036986 0.000606278 0.000271611 0.000173129 10
produce:reco3d:SpacePointSolver 6.84643 12.1818 14.906 11.9299 2.25508 10
produce:hitpdune:DisambigFromSpacePoints 0.133985 0.212533 0.286801 0.205186 0.0474276 10
produce:pandora:StandardPandora 23.6016 49.0357 92.4649 38.3881 22.8074 10
produce:pandoraTrack:LArPandoraTrackCreation 0.587727 0.866425 1.2051 0.860744 0.18037 10
produce:pandoraGnocalo:GnocchiCalorimetry 0.017814 0.0256988 0.0297586 0.0258818 0.00371404 10
[art]:TriggerResults:TriggerResultInserter 2.5088e-05 3.64546e-05 7.4412e-05 3.0786e-05 1.39582e-05 10
end_path:out1:RootOutput 5.608e-06 8.7081e-06 2.5278e-05 6.8e-06 5.56381e-06 10
end_path:out1:RootOutput(write) 5.09073 5.49747 6.58766 5.3585 0.410544 10
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5041.04 MB
Peak resident set size usage (VmHWM): 3014.51 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 10-Dec-2025 21:05:04 CET ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 41215 subRun: 1 event: 322441
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 