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Jobsub ID 262089.17@dunegpschedd01.fnal.gov

Jobsub ID262089.17@dunegpschedd01.fnal.gov
Workflow ID10929
Stage ID1
User nameimawby@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
GPUNo
RSS bytes1048576000 (1000 MiB)
Wall seconds limit7200 (2 hours)
Submitted time2025-12-02 10:39:54
SiteUK_RAL-Tier1
EntryLIGO_UK_RAL_arc_ce01
Last heartbeat2025-12-02 10:51:11
From worker nodeHostnamedune001-567051.0-host-172-16-114-139.nubes.stfc.ac.uk
cpuinfoAMD EPYC 7763 64-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes1048576000 (1000 MiB)
Wall seconds limit216000 (60 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2025-12-02 10:40:26
Input filesfardet-hd:nu_dune10kt_1x2x6_1102_611_20230826T070303Z_gen_g4_detsim_hitreco__20240229T164453Z_reco2.root
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-12-02 10:51:11
Saved logsjustin-logs:262089.17-dunegpschedd01.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

vmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/localProducts_larsoft_v10_08_00_e26_prof:/cvmfs/dune.opensciencegrid.org/products/dune:/cvmfs/larsoft.opensciencegrid.org/products:/cvmfs/larsoft.opensciencegrid.org/packages:/cvmfs/fermilab.opensciencegrid.org/products/common/db/
CETPKG_INSTALL=/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/localProducts_larsoft_v10_08_00_e26_prof

local product directory is /cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/localProducts_larsoft_v10_08_00_e26_prof
----------- this block should be empty ------------------
---------------------------------------------------------
Input PFN = root://dune.dcache.nikhef.nl:1094/pnfs/nikhef.nl/data/dune/generic/rucio/fardet-hd/97/97/nu_dune10kt_1x2x6_1102_611_20230826T070303Z_gen_g4_detsim_hitreco__20240229T164453Z_reco2.root
../justin-jobscript: line 64:  1305 Segmentation fault      (core dumped) lar -c $FCL_FILE $events_option "$pfn" > ${fname}_reco_${now}.log 2>&1
lar exit code 139
=== Start last 100 lines of lar log file ===
StandardRawDigitExtractService::ctor: StandardRawDigitExtractService:
StandardRawDigitExtractService::ctor:         LogLevel: 1
StandardRawDigitExtractService::ctor:    DigitReadTool: digitReader
StandardRawDigitExtractService::ctor:   PedestalOption: 1
StandardRawDigitExtractService::ctor:     FlagStuckOff: 0
StandardRawDigitExtractService::ctor:      FlagStuckOn: 0
StandardRawDigitPrepService::ctor: Fetching extract service.
StandardRawDigitPrepService::ctor: Fetching channel status provider.
StandardRawDigitPrepService::ctor:   Channel status provider: @0x183ed490
StandardRawDigitPrepService::ctor:   Extract service: @0x19d655b0
StandardRawDigitPrepService::ctor: Fetching deconvolution service.
StandardRawDigitPrepService::ctor:   Deconvolution service: @0x17e60440
StandardRawDigitPrepService::ctor: Fetching ROI building service.
StandardRawDigitPrepService::ctor:   ROI building service: @0x10a7c220
StandardRawDigitPrepService::ctor: Fetching wire building service.
StandardRawDigitPrepService::ctor:   Wire building service: @0x17e5fca0
StandardRawDigitPrepService::ctor: StandardRawDigitPrepService:
StandardRawDigitPrepService::ctor:              LogLevel: 1
StandardRawDigitPrepService::ctor:               SkipBad: 1
StandardRawDigitPrepService::ctor:             SkipNoisy: 0
StandardRawDigitPrepService::ctor:   ChannelStatusOnline: 0
StandardRawDigitPrepService::ctor:          DoMitigation: 0
StandardRawDigitPrepService::ctor:  DoEarlySignalFinding: 0
StandardRawDigitPrepService::ctor:        DoNoiseRemoval: 0
StandardRawDigitPrepService::ctor:       DoDeconvolution: 1
StandardRawDigitPrepService::ctor:  DoPedestalAdjustment: 0
StandardRawDigitPrepService::ctor:                 DoROI: 1
StandardRawDigitPrepService::ctor:               DoWires: 1
StandardRawDigitPrepService::ctor:                DoDump: 0
StandardRawDigitPrepService::ctor:  DoIntermediateStates: 0
StandardRawDigitPrepService::ctor: No display tools.
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_U (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_V (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_Y (Potential memory leak).
02-Dec-2025 10:41:01 UTC  Initiating request to open input file "root://dune.dcache.nikhef.nl:1094/pnfs/nikhef.nl/data/dune/generic/rucio/fardet-hd/97/97/nu_dune10kt_1x2x6_1102_611_20230826T070303Z_gen_g4_detsim_hitreco__20240229T164453Z_reco2.root"
02-Dec-2025 10:41:03 UTC  Opened input file "root://dune.dcache.nikhef.nl:1094/pnfs/nikhef.nl/data/dune/generic/rucio/fardet-hd/97/97/nu_dune10kt_1x2x6_1102_611_20230826T070303Z_gen_g4_detsim_hitreco__20240229T164453Z_reco2.root"
Begin processing the 1st record. run: 1102 subRun: 1 event: 61101 at 02-Dec-2025 10:41:04 UTC
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Vertex_DUNEFD_HD_Accel_1_U_v04_06_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Vertex_DUNEFD_HD_Accel_1_V_v04_06_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Vertex_DUNEFD_HD_Accel_1_W_v04_06_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Vertex_DUNEFD_HD_Accel_2_U_v04_06_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Vertex_DUNEFD_HD_Accel_2_V_v04_06_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Vertex_DUNEFD_HD_Accel_2_W_v04_06_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_SecVertex_DUNEFD_HD_Accel_1_U_v04_13_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_SecVertex_DUNEFD_HD_Accel_1_V_v04_13_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_SecVertex_DUNEFD_HD_Accel_1_W_v04_13_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/WindowModel_U.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/SplitPosModel_U.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Hierarchy_DUNEFD_HD_T_Edge_v014_15_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Hierarchy_DUNEFD_HD_T_Class_v014_15_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Hierarchy_DUNEFD_HD_S_Class_v014_15_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Hierarchy_DUNEFD_HD_TT_Edge_v014_15_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Hierarchy_DUNEFD_HD_TT_Class_v014_15_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Hierarchy_DUNEFD_HD_TS_Edge_v014_15_00.pt'
Loaded the TorchScript model '/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/2eb16b67837199f6df3fa6681d86eb3e0fa401cc/PandoraNet_Hierarchy_DUNEFD_HD_TS_Class_v014_15_00.pt'
PandoraMonitoring, only able to use default TApplication (limited functionality).
02-Dec-2025 10:41:08 UTC  Opened output file with pattern "%ifb_reco2.root"
Begin processing the 2nd record. run: 1102 subRun: 1 event: 61102 at 02-Dec-2025 10:42:12 UTC
Begin processing the 3rd record. run: 1102 subRun: 1 event: 61103 at 02-Dec-2025 10:42:16 UTC
Begin processing the 4th record. run: 1102 subRun: 1 event: 61104 at 02-Dec-2025 10:42:19 UTC
Begin processing the 5th record. run: 1102 subRun: 1 event: 61105 at 02-Dec-2025 10:42:22 UTC

================================================================================================================================
TimeTracker printout (sec)                        Min           Avg           Max         Median          RMS         nEvts   
================================================================================================================================
Full event                                      2.55428       3.17092       4.30421       2.66934      0.715782         5     
--------------------------------------------------------------------------------------------------------------------------------
source:RootInput(read)                        0.00988519     0.0175321     0.0197025     0.0193591    0.00382582        5     
reco:pandora:StandardPandora                    2.52733       3.14347       4.26926       2.64155      0.713281         5     
[art]:TriggerResults:TriggerResultInserter    1.6209e-05    5.25472e-05   0.000172134   2.2022e-05    6.01837e-05       5     
end_path:out1:RootOutput                       4.861e-06    8.2822e-06     2.058e-05     5.12e-06     6.15733e-06       5     
end_path:out1:RootOutput(write)               0.00391357    0.00959028     0.0149847    0.00818824    0.00406891        5     
================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 2277.13 MB
  Peak resident set size usage (VmHWM): 1243.94 MB
====================================================================================================
%MSG-s ArtException:  PostEndJob 02-Dec-2025 10:42:28 UTC ModuleEndJob
---- FileReadError BEGIN
  ---- FatalRootError BEGIN
    Fatal Root Error: TNetXNGFile::ReadBuffer
    [ERROR] Server responded with an error: [3012] Internal timeout
    ROOT severity: 3000
  ---- FatalRootError END
  
---- FileReadError END
---- FatalRootError BEGIN
  Fatal Root Error: TTree::SetEntries
  Tree branches have different numbers of entries, eg EventAuxiliary has 5 entries while sim::OpDetDivRecs_opdigi__detsim. has 100 entries.
  ROOT severity: 2000
---- FatalRootError END
---- FatalRootError BEGIN
  Fatal Root Error: TNetXNGFile::Close
  [ERROR] Server responded with an error: [3012] Internal timeout
  ROOT severity: 3000
---- FatalRootError END
%MSG
=== End last 100 lines of lar log file ===
justIN time: 2025-12-19 05:18:12 UTC       justIN version: 01.05.03