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Jobsub ID 264320.1@dunegpschedd01.fnal.gov

Jobsub ID264320.1@dunegpschedd01.fnal.gov
Workflow ID11057
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors2
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-12-06 09:53:50
SiteES_PIC
EntryDUNE_T1_ES_PIC_ce16-multicore
Last heartbeat2025-12-06 11:38:28
From worker nodeHostnametds421.pic.es
cpuinfoAMD EPYC 7502 32-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors2
RSS bytes4194304000 (4000 MiB)
Wall seconds limit216000 (60 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2025-12-06 09:55:19
Input filesvd-protodune:np02vd_raw_run041215_1825_df-s04-d1_dw_0_20251206T064941.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-12-06 11:38:28
Saved logsjustin-logs:264320.1-dunegpschedd01.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

----------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                      8.9301e-05    0.000119674   0.000199414   0.000102472   3.13596e-05      23     
produce:tpcrawdecoder:PDVDTPCReader               37.3018       50.5826       173.209       39.5363       33.1246        23     
produce:triggerrawdecoder:PDVDTriggerReader4     0.505926      0.510574       0.53053      0.507833     0.00643827       23     
produce:pdvddaphne:DAPHNEReaderPDVD             0.000416248   0.000534262   0.00116245    0.000483989   0.000149631      23     
produce:ophit:OpHitFinder                       6.7451e-05    0.000147467   0.000833596   9.5122e-05    0.000157427      23     
produce:opflash:OpFlashFinderVerticalDrift      5.7091e-05    0.000102619   0.000481299   7.2891e-05    8.58419e-05      23     
produce:wclsdatavd:WireCellToolkit                89.8413       118.162       153.181       118.408       16.2059        23     
produce:gaushit:GausHitFinder                    0.909858       1.99714       3.11511       1.93604      0.532413        23     
produce:nhitsfilter:NumberOfHitsFilter          0.000194654   0.000477195   0.00153481    0.000421978   0.000243631      23     
produce:reco3d:SpacePointSolver                   4.59776       12.2455       20.5417       12.8336       3.68999        23     
produce:hitpdune:DisambigFromSpacePoints         0.109612      0.277193      0.496831      0.267717      0.0899629       23     
produce:pandora:StandardPandora                   19.2488       58.4211       120.632       57.087        24.9718        23     
produce:pandoraTrack:LArPandoraTrackCreation      0.28043       1.18378       2.41642       1.17855      0.498339        23     
produce:pandoraGnocalo:GnocchiCalorimetry        0.0161208     0.0379993     0.0708489     0.037224      0.0111091       23     
[art]:TriggerResults:TriggerResultInserter       2.894e-05    6.5929e-05    0.000185343   5.7091e-05    3.89242e-05      23     
end_path:out1:RootOutput                         3.91e-06     1.34937e-05   5.4441e-05     9.481e-06    1.12819e-05      23     
end_path:out1:RootOutput(write)                   5.41906       6.37884       7.75418       6.41591      0.569363        23     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 5396.91 MB
  Peak resident set size usage (VmHWM): 3332.26 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run041215_1825_df-s04-d1_dw_0_20251206T064941_reco_stage1_20251206T113214_keepup.root
\tHists: np02vd_raw_run041215_1825_df-s04-d1_dw_0_20251206T064941_reco_stage1_20251206T113215_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run041215_1825_df-s04-d1_dw_0_20251206T064941_reco_stage1_20251206T113214_keepup.root
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
    conn = connection.create_connection(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
    raise err
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
    sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
    conn = self._new_conn()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
    raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x14efad325040>: Failed to establish a new connection: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run041215_1825_df-s04-d1_dw_0_20251206T064941.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x14efad325040>: Failed to establish a new connection: [Errno 110] Connection timed out'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run041215_1825_df-s04-d1_dw_0_20251206T064941.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x14efad325040>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata
justIN time: 2025-12-19 04:00:53 UTC       justIN version: 01.05.03