Jobsub ID 266021.8@dunegpschedd01.fnal.gov
| Jobsub ID | 266021.8@dunegpschedd01.fnal.gov |
| Workflow ID | 11076 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 2 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-12-10 12:12:55 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc03 |
| Last heartbeat | 2025-12-10 13:05:43 |
| From worker node | Hostname | wn-la-18.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 2 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | outputting_failed |
| Started | 2025-12-10 12:14:04 |
| Input files | vd-protodune:np02vd_raw_run041215_7448_df-s04-d0_dw_0_20251208T024655.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-12-10 13:05:43 |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
[ timer ] Timer: WireCell::Gen::Retagger : 0 sec
[13:55:50.491] I [ timer ] Timer: WireCell::Gen::FrameFanout : 0 sec
[13:55:50.491] I [ timer ] Timer: wcls::RawFrameSource : 0 sec
[13:55:50.491] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[13:55:50.491] I [ timer ] Timer: Total node execution : 167.78999923355877 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 47208 traces tagged "gauss"
FrameSaver: q=1.70476e+07 n=1253537 tag=gauss
wclsFrameSaver: saving 58733 traces tagged "wiener"
FrameSaver: q=1.79002e+07 n=1209354 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 1652 XUs and 1544 XVs -> 83 XUVs
C:0 T:1 607 XUs and 375 XVs -> 14 XUVs
C:0 T:2 1245 XUs and 1699 XVs -> 74 XUVs
C:0 T:3 1154 XUs and 1452 XVs -> 62 XUVs
C:0 T:4 457 XUs and 326 XVs -> 17 XUVs
C:0 T:5 287 XUs and 423 XVs -> 12 XUVs
C:0 T:6 922 XUs and 974 XVs -> 39 XUVs
C:0 T:7 1220 XUs and 1224 XVs -> 41 XUVs
C:0 T:8 22 XUs and 24 XVs -> 0 XUVs
C:0 T:9 6 XUs and 10 XVs -> 0 XUVs
C:0 T:10 8 XUs and 8 XVs -> 0 XUVs
C:0 T:11 120 XUs and 101 XVs -> 5 XUVs
C:0 T:12 978 XUs and 852 XVs -> 54 XUVs
C:0 T:13 2476 XUs and 2994 XVs -> 185 XUVs
C:0 T:14 1771 XUs and 2452 XVs -> 105 XUVs
C:0 T:15 3478 XUs and 2551 XVs -> 171 XUVs
862 XUVs total
742 collection wire objects
862 potential space points
Neighbour search...
5266 tests to find 2820 neighbours
Iterating with no regularization...
Begin: 1.7221e+09
0 1.70846e+09
1 1.70835e+09
Now with regularization...
Begin: 1.70312e+09
0 1.70312e+09
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Wed Dec 10 13:58:27 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/b5/82/np02vd_raw_run041215_7448_df-s04-d0_dw_0_20251208T024655.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x2f912c40, total read size = 907272, bytes this sub-read = 907272, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 8.068e-05 280.441 386.089 293.641 106.459 9
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.1085e-05 0.000106008 0.000244645 8.068e-05 5.14135e-05 9
produce:tpcrawdecoder:PDVDTPCReader 97.032 114.241 139.652 106.044 14.6926 8
produce:triggerrawdecoder:PDVDTriggerReader4 0.310489 0.44154 0.637837 0.431035 0.100437 8
produce:pdvddaphne:DAPHNEReaderPDVD 0.000360978 0.000430404 0.000779341 0.000376676 0.000132712 8
produce:ophit:OpHitFinder 8.2402e-05 0.000160174 0.000607014 8.94685e-05 0.000169587 8
produce:opflash:OpFlashFinderVerticalDrift 5.9669e-05 0.000111962 0.000358433 8.6018e-05 9.41758e-05 8
produce:wclsdatavd:WireCellToolkit 115.63 135.706 168.103 132.747 15.0235 8
produce:gaushit:GausHitFinder 1.21276 1.85028 3.38993 1.71208 0.636496 8
produce:nhitsfilter:NumberOfHitsFilter 0.000220589 0.00047938 0.000820983 0.000461097 0.000179861 8
produce:reco3d:SpacePointSolver 7.53052 12.6677 20.8995 12.8066 3.81473 8
produce:hitpdune:DisambigFromSpacePoints 0.175518 0.252381 0.398615 0.222746 0.0693653 8
produce:pandora:StandardPandora 18.0593 43.0061 80.1638 39.3961 16.5546 8
produce:pandoraTrack:LArPandoraTrackCreation 0.531657 1.41148 2.74802 1.36292 0.736338 8
produce:pandoraGnocalo:GnocchiCalorimetry 0.0186178 0.0325441 0.0486127 0.0349327 0.00941007 8
[art]:TriggerResults:TriggerResultInserter 3.1597e-05 6.12918e-05 0.000158217 5.11955e-05 3.74712e-05 8
end_path:out1:RootOutput 6.76e-06 1.4956e-05 5.7105e-05 9.9545e-06 1.60016e-05 8
end_path:out1:RootOutput(write) 5.19234 5.76473 6.61887 5.49502 0.53651 8
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5192.49 MB
Peak resident set size usage (VmHWM): 3168.67 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 10-Dec-2025 13:58:28 CET ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 41215 subRun: 1 event: 347700
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 