Jobsub ID 266022.3@dunegpschedd01.fnal.gov
| Jobsub ID | 266022.3@dunegpschedd01.fnal.gov |
| Workflow ID | 11077 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 2 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-12-10 12:12:55 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc02 |
| Last heartbeat | 2025-12-10 13:05:38 |
| From worker node | Hostname | wn-da-17.gina.surf.nl |
| cpuinfo | AMD EPYC 7702P 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 2 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | outputting_failed |
| Started | 2025-12-10 12:14:05 |
| Input files | vd-protodune:np02vd_raw_run041215_8899_df-s04-d1_dw_0_20251208T140259.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-12-10 13:05:38 |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
sec
[13:55:34.338] I [ timer ] Timer: WireCell::SigProc::ChannelSelector : 0 sec
[13:55:34.338] I [ timer ] Timer: WireCell::Gen::Retagger : 0 sec
[13:55:34.338] I [ timer ] Timer: WireCell::Gen::FrameFanout : 0 sec
[13:55:34.338] I [ timer ] Timer: wcls::RawFrameSource : 0 sec
[13:55:34.338] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[13:55:34.338] I [ timer ] Timer: Total node execution : 148.97000066190958 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 34328 traces tagged "gauss"
FrameSaver: q=1.46293e+07 n=1017071 tag=gauss
wclsFrameSaver: saving 42012 traces tagged "wiener"
FrameSaver: q=1.51816e+07 n=986749 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 31 XUs and 38 XVs -> 0 XUVs
C:0 T:1 892 XUs and 810 XVs -> 30 XUVs
C:0 T:2 622 XUs and 487 XVs -> 21 XUVs
C:0 T:3 63 XUs and 85 XVs -> 1 XUVs
C:0 T:4 698 XUs and 814 XVs -> 36 XUVs
C:0 T:5 214 XUs and 371 XVs -> 6 XUVs
C:0 T:6 653 XUs and 709 XVs -> 27 XUVs
C:0 T:7 165 XUs and 146 XVs -> 10 XUVs
C:0 T:8 18 XUs and 25 XVs -> 0 XUVs
C:0 T:9 2 XUs and 4 XVs -> 0 XUVs
C:0 T:10 24 XUs and 30 XVs -> 0 XUVs
C:0 T:11 38 XUs and 31 XVs -> 1 XUVs
C:0 T:12 553 XUs and 1463 XVs -> 55 XUVs
C:0 T:13 1032 XUs and 653 XVs -> 58 XUVs
C:0 T:14 2377 XUs and 3205 XVs -> 125 XUVs
C:0 T:15 1248 XUs and 705 XVs -> 41 XUVs
411 XUVs total
360 collection wire objects
411 potential space points
Neighbour search...
2063 tests to find 870 neighbours
Iterating with no regularization...
Begin: 8.0066e+08
0 7.94601e+08
1 7.94584e+08
Now with regularization...
Begin: 7.92534e+08
0 7.92533e+08
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Wed Dec 10 13:58:27 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/e4/93/np02vd_raw_run041215_8899_df-s04-d1_dw_0_20251208T140259.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x371247f0, total read size = 979272, bytes this sub-read = 979272, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 6.9464e-05 311.393 480.307 340.474 131.806 8
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 6.4435e-05 0.000101609 0.000295871 7.54505e-05 7.35756e-05 8
produce:tpcrawdecoder:PDVDTPCReader 113.768 141.93 173.492 135.008 20.2001 7
produce:triggerrawdecoder:PDVDTriggerReader4 0.349685 0.521854 0.698979 0.514205 0.103261 7
produce:pdvddaphne:DAPHNEReaderPDVD 0.000312404 0.000397572 0.000752372 0.000336289 0.00014612 7
produce:ophit:OpHitFinder 6.0427e-05 0.000141523 0.000583876 6.8262e-05 0.000180695 7
produce:opflash:OpFlashFinderVerticalDrift 4.2582e-05 9.12244e-05 0.000355826 4.8053e-05 0.000108072 7
produce:wclsdatavd:WireCellToolkit 87.8345 128.024 157.43 131.997 23.0157 7
produce:gaushit:GausHitFinder 1.09527 1.48307 2.30798 1.33591 0.405188 7
produce:nhitsfilter:NumberOfHitsFilter 0.000201458 0.000660716 0.00118202 0.000579909 0.000400084 7
produce:reco3d:SpacePointSolver 6.09885 10.404 16.0098 10.6412 3.74226 7
produce:hitpdune:DisambigFromSpacePoints 0.12324 0.240766 0.50573 0.257788 0.125818 7
produce:pandora:StandardPandora 24.1739 67.91 161.405 52.0427 49.5617 7
produce:pandoraTrack:LArPandoraTrackCreation 0.442449 0.992881 2.39983 0.801525 0.636026 7
produce:pandoraGnocalo:GnocchiCalorimetry 0.0199085 0.027566 0.0368902 0.0281555 0.00557796 7
[art]:TriggerResults:TriggerResultInserter 1.9798e-05 5.04973e-05 7.1778e-05 6.0486e-05 1.89793e-05 7
end_path:out1:RootOutput 4.518e-06 1.18199e-05 2.7844e-05 1.1352e-05 7.72169e-06 7
end_path:out1:RootOutput(write) 3.80423 4.27915 4.73014 4.21421 0.306345 7
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5461.68 MB
Peak resident set size usage (VmHWM): 3439.59 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 10-Dec-2025 13:58:28 CET ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 41215 subRun: 1 event: 415321
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 