Jobsub ID 269049.96@dunegpschedd01.fnal.gov
| Jobsub ID | 269049.96@dunegpschedd01.fnal.gov |
| Workflow ID | 11251 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| Requested | Processors | 4 |
| GPU | No |
| RSS bytes | 6815744000 (6500 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2025-12-18 15:20:56 |
| Site | UK_Glasgow |
| Entry | CLAS12_T3_UK_ScotGrid_GLA_ce04_scitok |
| Last heartbeat | 2025-12-18 17:26:17 |
| From worker node | Hostname | wn-d22-010.beowulf.cluster |
| cpuinfo | AMD EPYC 7513 32-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 4 |
| RSS bytes | 7864320000 (7500 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-12-18 15:44:02 |
| Input files | vd-protodune-top:3430_24_b_pvdt.test
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-12-18 17:26:17 |
| Saved logs | justin-logs:269049.96-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
===============================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 45.2111 57.6483 91.8519 55.6913 10.7939 30
----------------------------------------------------------------------------------------------------------------------------------
source:VDColdboxTDERawInput(read) 5.6135e-05 0.000139143 0.000470023 0.000124935 7.54108e-05 30
produce:caldata:DataPrepModule 0.160522 0.255854 0.470585 0.261168 0.0708777 30
produce:wclsdatavd:WireCellToolkit 35.9248 44.1588 63.7438 43.1913 5.29659 30
produce:gaushit:GausHitFinder 0.227393 1.31137 4.01824 0.847084 0.937 30
produce:reco3d:SpacePointSolver 1.31997 3.56655 6.81244 3.14413 1.45038 30
produce:hitpdune:DisambigFromSpacePoints 0.00986497 0.0279742 0.0618397 0.0238677 0.0160315 30
produce:pandora:StandardPandora 1.16587 5.93571 21.1671 4.33008 4.46667 30
produce:pandoraTrack:LArPandoraTrackCreation 0.0407796 0.115239 0.254319 0.0997322 0.0496118 30
produce:pandoraGnocalo:GnocchiCalorimetry 0.00499805 0.0117062 0.0201444 0.0115294 0.00332292 30
[art]:TriggerResults:TriggerResultInserter 1.6481e-05 3.11014e-05 5.6095e-05 2.7993e-05 1.00992e-05 30
end_path:out1:RootOutput 3.487e-06 6.35467e-06 2.658e-05 5.2345e-06 4.28587e-06 30
end_path:out1:RootOutput(write) 1.80567 2.24372 3.18401 2.10813 0.360347 30
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 6008.95 MB
Peak resident set size usage (VmHWM): 3578.76 MB
Details saved in: 'mem.db'
====================================================================================================
ToolBasedRawDigitPrepService:dtor: Event count: 30
ToolBasedRawDigitPrepService:dtor: Call count: 60
ToolBasedRawDigitPrepService:dtor: Time report for 3 tools.
ToolBasedRawDigitPrepService:dtor: digitReader: 0.08 sec/event
ToolBasedRawDigitPrepService:dtor: vdcb_adcChannelRawRmsFiller: 0.15 sec/event
ToolBasedRawDigitPrepService:dtor: adcSampleFiller: 0.00 sec/event
Art has completed and will exit with status 0.
Output files:
\tReco: 3430_24_b_pvdt_reco_stage1_20251218T172104_reco.root
Forming reco metadata
Successfully opened file 3430_24_b_pvdt_reco_stage1_20251218T172104_reco.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
conn = connection.create_connection(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
raise err
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
conn = self._new_conn()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x151c56fc9f10>: Failed to establish a new connection: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=3430_24_b_pvdt.test&namespace=vd-protodune-top (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x151c56fc9f10>: Failed to establish a new connection: [Errno 110] Connection timed out'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/273045f43d7c86de1848a0b2b33e0d614d73cf83/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/273045f43d7c86de1848a0b2b33e0d614d73cf83/inherit_metadata.py", line 70, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/273045f43d7c86de1848a0b2b33e0d614d73cf83/inherit_metadata.py", line 25, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=3430_24_b_pvdt.test&namespace=vd-protodune-top (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x151c56fc9f10>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata 