Jobsub ID 293583.11@dunegpschedd02.fnal.gov
| Jobsub ID | 293583.11@dunegpschedd02.fnal.gov |
| Workflow ID | 12253 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2026-01-22 14:45:06 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc03 |
| Last heartbeat | 2026-01-22 16:18:55 |
| From worker node | Hostname | wn-lb-08.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2026-01-22 14:46:03 |
| Input files | vd-protodune:np02vd_raw_run039273_1054_df-s01-d3_dw_0_20250901T003726.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2026-01-22 16:18:55 |
| Saved logs | justin-logs:293583.11-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
224.858 289.451 381.087 284.355 39.2533 18
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 9.6295e-05 0.000131597 0.000327732 0.000104217 6.64166e-05 18
produce:tpcrawdecoder:PDVDTPCReader 57.3463 93.1162 169.336 80.5069 28.6799 18
produce:triggerrawdecoder:PDVDTriggerReader4 0.0366457 0.0444873 0.0597764 0.0415247 0.00772512 18
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0186064 0.0241163 0.0352758 0.0230071 0.00518957 18
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.0904023 0.103678 0.172404 0.0949245 0.0229715 18
produce:beamevent:BeamEvent 0.000269294 1.08933 19.1361 0.000772268 4.37735 18
produce:pdvddaphne:DAPHNEReaderPDVD 10.287 13.908 22.0571 12.3457 3.1905 18
produce:ophit:OpHitFinder 0.0452278 0.0710155 0.11714 0.0738709 0.0167994 18
produce:wclsdatavd:WireCellToolkit 125.91 141.568 146.913 142.758 4.77687 18
produce:gaushit:GausHitFinder 0.896008 1.49413 2.19358 1.51774 0.343115 18
produce:nhitsfilter:NumberOfHitsFilter 0.000297386 0.000754161 0.00203283 0.000608567 0.000478084 18
produce:reco3d:SpacePointSolver 9.05588 21.313 39.4275 20.6973 7.17285 18
produce:hitpdune:DisambigFromSpacePoints 0.122779 0.349085 0.66299 0.343688 0.127986 18
produce:cluster3d:Cluster3D 1.59672 9.06118 24.7808 7.34008 6.49449 18
[art]:TriggerResults:TriggerResultInserter 3.2098e-05 5.04229e-05 0.000111268 4.40455e-05 1.85646e-05 18
end_path:out1:RootOutput 6.35e-06 1.12231e-05 3.1737e-05 7.8675e-06 7.13321e-06 18
end_path:out1:RootOutput(write) 4.94484 7.20074 8.59831 7.20861 0.763437 18
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5952.96 MB
Peak resident set size usage (VmHWM): 3993.51 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run039273_1054_df-s01-d3_dw_0_20250901T003726_reco_stage0_20260122T161513_offline.root
Forming reco metadata
Successfully opened file np02vd_raw_run039273_1054_df-s01-d3_dw_0_20250901T003726_reco_stage0_20260122T161513_offline.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
conn = connection.create_connection(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
raise err
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
conn = self._new_conn()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x14a3b5755220>: Failed to establish a new connection: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run039273_1054_df-s01-d3_dw_0_20250901T003726.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x14a3b5755220>: Failed to establish a new connection: [Errno 110] Connection timed out'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/15312db012789c8d8eb7160dddcf1faebbe4a3af/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/15312db012789c8d8eb7160dddcf1faebbe4a3af/inherit_metadata.py", line 68, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser1.opensciencegrid.org/sw/dune/15312db012789c8d8eb7160dddcf1faebbe4a3af/inherit_metadata.py", line 23, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run039273_1054_df-s01-d3_dw_0_20250901T003726.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x14a3b5755220>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata 