Jobsub ID 297905.12@dunegpschedd02.fnal.gov
| Jobsub ID | 297905.12@dunegpschedd02.fnal.gov |
| Workflow ID | 12713 |
| Stage ID | 1 |
| User name | calcuttj@fnal.gov |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 2097152000 (2000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2026-02-03 21:26:20 |
| Site | BR_CBPF |
| Entry | DUNE_BR_CBPF_ce01 |
| Last heartbeat | 2026-02-03 21:33:20 |
| From worker node | Hostname | wn48 |
| cpuinfo | Intel(R) Xeon(R) CPU E5-2640 v4 @ 2.40GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 2097152000 (2000 MiB) |
| Wall seconds limit | 257400 (71 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | finished |
| Started | 2026-02-03 21:27:49 |
| Input files | |
| Jobscript | Exit code | 0 |
| Real time | 1m (83s) |
| CPU time | 1m (66s = 79%) |
| Max RSS bytes | 299225088 (285 MiB) |
| Outputting started | 2026-02-03 21:29:13 |
| Output files | |
| Finished | 2026-02-03 21:33:20 |
| Saved logs | justin-logs:297905.12-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
Pip installing snakemake
WARNING: The script pulptest is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script tabulate is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script humanfriendly is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts docutils, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex and rst2xml are installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script normalizer is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script yte is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts jupyter, jupyter-migrate and jupyter-troubleshoot are installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script jsonschema is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The script jupyter-trust is installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts snakemake and snakemake-bash-completion are installed in '/home/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
[notice] A new release of pip is available: 23.0 -> 26.0
[notice] To update, run: pip install --upgrade pip
7.32.4
workflow/Snakefile
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 1 (use --cores to define parallelism)
Rules claiming more threads will be scaled down.
Job stats:
job count
----- -------
all 1
jgf 1
total 2
Select jobs to execute...
Calling justin get file -- 0
No files available from this stage
[Tue Feb 3 18:29:12 2026]
Error in rule jgf:
jobid: 1
output: justin_input_pfns.txt, justin_input_dids.txt
shell:
touch justin_input_pfns.txt justin_input_dids.txt
for ((i=0; i < 1; i++)); do
echo "Calling justin get file -- $i"
DID_PFN_RSE=$($JUSTIN_PATH/justin-get-file)
echo $?
if [ "$DID_PFN_RSE" == "" ] ; then
echo "Could not get file. Exiting loop"
break
fi
echo "justin-get-file successful: $DID_PFN_RSE"
did=$(echo $DID_PFN_RSE | cut -d' ' -f1)
pfn=$(echo $DID_PFN_RSE | cut -d' ' -f2)
echo $did >> justin_input_dids.txt
echo $pfn >> justin_input_pfns.txt
done
(one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
Removing output files of failed job jgf since they might be corrupted:
justin_input_pfns.txt, justin_input_dids.txt
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2026-02-03T182911.286082.snakemake.log
Done running snakemake 