Jobsub ID 36313.89@dunegpschedd02.fnal.gov
| Jobsub ID | 36313.89@dunegpschedd02.fnal.gov |
| Workflow ID | 2326 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod.mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-08 10:43:49 |
| Site | UK_QMUL |
| Entry | DUNE_UK_London_QMUL_arcce02 |
| Last heartbeat | 2025-09-08 15:55:39 |
| From worker node | Hostname | cn545.htc.esc.qmul |
| cpuinfo | Intel(R) Xeon(R) Gold 6252 CPU @ 2.10GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-08 13:18:22 |
| Input files | vd-protodune:np02vd_raw_run039324_2206_df-s05-d2_dw_0_20250907T143157.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-08 15:55:39 |
| Saved logs | justin-logs:36313.89-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
Input3(read) 8.4762e-05 0.000139475 0.00039849 0.000130646 5.31875e-05 27
produce:tpcrawdecoder:PDVDTPCReader 16.9996 27.7974 43.9961 27.0079 8.08917 27
produce:triggerrawdecoder:PDVDTriggerReader4 0.0333353 0.0354151 0.0454979 0.0336273 0.00417855 27
produce:pdvddaphne:DAPHNEReaderPDVD 5.98902 9.50767 13.2099 9.04917 1.63852 27
produce:ophit:OpHitFinder 0.0433225 0.095823 0.111766 0.0974211 0.0139373 27
produce:opflash:OpFlashFinderVerticalDrift 0.00944074 0.028204 0.0421518 0.0284706 0.0071509 27
produce:wclsdatavd:WireCellToolkit 73.287 111.356 171.951 107.38 19.9641 27
produce:gaushit:GausHitFinder 2.01399 2.89139 4.94499 2.75057 0.665399 27
produce:nhitsfilter:NumberOfHitsFilter 0.000553317 0.00078645 0.00120961 0.000745486 0.00016571 27
produce:reco3d:SpacePointSolver 15.0684 23.4517 44.0187 22.2882 6.44111 27
produce:hitpdune:DisambigFromSpacePoints 0.289309 0.570984 0.975911 0.495501 0.19263 27
produce:pandora:StandardPandora 71.2095 147.034 278.838 130.742 64.9978 27
produce:pandoraTrack:LArPandoraTrackCreation 1.87086 3.62234 10.0495 3.27136 1.63536 27
produce:pandoraGnocalo:GnocchiCalorimetry 0.0434024 0.0744864 0.113485 0.0720905 0.015808 27
[art]:TriggerResults:TriggerResultInserter 7.9034e-05 0.000108121 0.00024097 0.000100298 2.83642e-05 27
end_path:out1:RootOutput 1.323e-05 2.39906e-05 7.0907e-05 2.2258e-05 9.88339e-06 27
end_path:out1:RootOutput(write) 4.46712 8.11255 12.3978 8.20753 1.32308 27
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 4939.36 MB
Peak resident set size usage (VmHWM): 3049.46 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run039324_2206_df-s05-d2_dw_0_20250907T143157_reco_stage1_20250908T155027_keepup.root
\tHists: np02vd_raw_run039324_2206_df-s05-d2_dw_0_20250907T143157_reco_stage1_20250908T155029_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run039324_2206_df-s05-d2_dw_0_20250907T143157_reco_stage1_20250908T155027_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 445, in _make_request
six.raise_from(e, None)
File "<string>", line 3, in raise_from
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 440, in _make_request
httplib_response = conn.getresponse()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 1377, in getresponse
response.begin()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 320, in begin
version, status, reason = self._read_status()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 289, in _read_status
raise RemoteDisconnected("Remote end closed connection without"
http.client.RemoteDisconnected: Remote end closed connection without response
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 532, in increment
raise six.reraise(type(error), error, _stacktrace)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/packages/six.py", line 769, in reraise
raise value.with_traceback(tb)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 445, in _make_request
six.raise_from(e, None)
File "<string>", line 3, in raise_from
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 440, in _make_request
httplib_response = conn.getresponse()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 1377, in getresponse
response.begin()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 320, in begin
version, status, reason = self._read_status()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 289, in _read_status
raise RemoteDisconnected("Remote end closed connection without"
urllib3.exceptions.ProtocolError: ('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 498, in send
raise ConnectionError(err, request=request)
requests.exceptions.ConnectionError: ('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))
Error in reco metadata 