Jobsub ID 36361.70@dunegpschedd02.fnal.gov
| Jobsub ID | 36361.70@dunegpschedd02.fnal.gov |
| Workflow ID | 2329 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod.mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-08 12:39:56 |
| Site | NL_NIKHEF |
| Entry | VIRGO_NL_NIKHEF_juk |
| Last heartbeat | 2025-09-08 15:52:46 |
| From worker node | Hostname | wn-snel-032.farm.nikhef.nl |
| cpuinfo | AMD EPYC 7H12 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | outputting_failed |
| Started | 2025-09-08 14:42:41 |
| Input files | vd-protodune:np02vd_raw_run039324_2760_df-s01-d3_dw_0_20250908T014951.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-08 15:52:38 |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
Input3(read) 6.1475e-05 7.43193e-05 0.000206316 6.8488e-05 2.6299e-05 27
produce:tpcrawdecoder:PDVDTPCReader 24.638 39.2942 89.3422 35.4024 13.5327 27
produce:triggerrawdecoder:PDVDTriggerReader4 0.0348501 0.0417503 0.13131 0.0353909 0.0186454 27
produce:pdvddaphne:DAPHNEReaderPDVD 4.76518 7.25681 15.1323 7.0631 2.21491 27
produce:ophit:OpHitFinder 0.0441124 0.0557195 0.0694676 0.0528065 0.0078059 27
produce:opflash:OpFlashFinderVerticalDrift 0.00834736 0.0149368 0.0229904 0.0137681 0.00421602 27
produce:wclsdatavd:WireCellToolkit 35.0285 43.4349 64.3082 42.3414 5.49009 27
produce:gaushit:GausHitFinder 0.59055 1.01572 1.48028 1.03464 0.234835 27
produce:nhitsfilter:NumberOfHitsFilter 0.000169708 0.000273482 0.00050201 0.000261509 7.21913e-05 27
produce:reco3d:SpacePointSolver 4.68433 10.7931 18.6033 10.7644 3.58659 27
produce:hitpdune:DisambigFromSpacePoints 0.0666225 0.164219 0.314228 0.14682 0.0692767 27
produce:pandora:StandardPandora 13.5839 44.5778 79.7914 38.8685 18.9991 27
produce:pandoraTrack:LArPandoraTrackCreation 0.14399 0.510051 1.20205 0.518316 0.218451 27
produce:pandoraGnocalo:GnocchiCalorimetry 0.0121758 0.0225511 0.0380437 0.0221472 0.00585473 27
[art]:TriggerResults:TriggerResultInserter 1.2804e-05 1.79478e-05 5.6385e-05 1.603e-05 7.81637e-06 27
end_path:out1:RootOutput 3.237e-06 4.2613e-06 1.8094e-05 3.707e-06 2.72851e-06 27
end_path:out1:RootOutput(write) 2.95026 3.30017 4.76872 3.24415 0.333259 27
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 4832.91 MB
Peak resident set size usage (VmHWM): 2955.83 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run039324_2760_df-s01-d3_dw_0_20250908T014951_reco_stage1_20250908T155107_keepup.root
\tHists: np02vd_raw_run039324_2760_df-s01-d3_dw_0_20250908T014951_reco_stage1_20250908T155107_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run039324_2760_df-s01-d3_dw_0_20250908T014951_reco_stage1_20250908T155107_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 445, in _make_request
six.raise_from(e, None)
File "<string>", line 3, in raise_from
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 440, in _make_request
httplib_response = conn.getresponse()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 1377, in getresponse
response.begin()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 320, in begin
version, status, reason = self._read_status()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 289, in _read_status
raise RemoteDisconnected("Remote end closed connection without"
http.client.RemoteDisconnected: Remote end closed connection without response
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 532, in increment
raise six.reraise(type(error), error, _stacktrace)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/packages/six.py", line 769, in reraise
raise value.with_traceback(tb)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 445, in _make_request
six.raise_from(e, None)
File "<string>", line 3, in raise_from
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 440, in _make_request
httplib_response = conn.getresponse()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 1377, in getresponse
response.begin()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 320, in begin
version, status, reason = self._read_status()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/http/client.py", line 289, in _read_status
raise RemoteDisconnected("Remote end closed connection without"
urllib3.exceptions.ProtocolError: ('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 498, in send
raise ConnectionError(err, request=request)
requests.exceptions.ConnectionError: ('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))
Error in reco metadata 