Jobsub ID 36968.138@dunegpschedd02.fnal.gov
| Jobsub ID | 36968.138@dunegpschedd02.fnal.gov |
| Workflow ID | 2365 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-09 13:39:07 |
| Site | UK_QMUL |
| Entry | DUNE_UK_London_QMUL_arcce03 |
| Last heartbeat | 2025-09-09 16:00:51 |
| From worker node | Hostname | cn545.htc.esc.qmul |
| cpuinfo | Intel(R) Xeon(R) Gold 6252 CPU @ 2.10GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-09 13:43:42 |
| Input files | vd-protodune:np02vd_raw_run039349_0038_df-s03-d1_dw_0_20250909T130354.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-09 16:00:51 |
| Saved logs | justin-logs:36968.138-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
----------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 0.000113139 0.000161158 0.000402511 0.000143494 5.53495e-05 28
produce:tpcrawdecoder:PDVDTPCReader 20.0988 33.1533 55.7601 31.0733 9.29654 28
produce:triggerrawdecoder:PDVDTriggerReader4 0.0335926 0.0364626 0.0677803 0.0338831 0.00705467 28
produce:pdvddaphne:DAPHNEReaderPDVD 8.71791 10.781 13.1683 10.7639 1.1328 28
produce:ophit:OpHitFinder 0.0912492 0.104211 0.116585 0.103146 0.00684681 28
produce:opflash:OpFlashFinderVerticalDrift 0.0151118 0.0295836 0.040043 0.0299589 0.00560253 28
produce:wclsdatavd:WireCellToolkit 84.5787 98.3009 110.224 99.4921 6.5602 28
produce:gaushit:GausHitFinder 1.79266 2.59994 3.48894 2.65453 0.43917 28
produce:nhitsfilter:NumberOfHitsFilter 0.000518794 0.000807078 0.00142297 0.000778756 0.000180504 28
produce:reco3d:SpacePointSolver 11.0341 17.8147 25.4307 18.2176 4.04142 28
produce:hitpdune:DisambigFromSpacePoints 0.168005 0.375507 0.596205 0.375156 0.0986557 28
produce:pandora:StandardPandora 40.0013 102.248 293.783 91.0264 52.1925 28
produce:pandoraTrack:LArPandoraTrackCreation 1.55867 2.93046 4.76903 3.10729 0.90914 28
produce:pandoraGnocalo:GnocchiCalorimetry 0.02661 0.064261 0.0866897 0.0645104 0.0137785 28
[art]:TriggerResults:TriggerResultInserter 4.9727e-05 0.00010079 0.000230667 9.4943e-05 3.25719e-05 28
end_path:out1:RootOutput 1.0004e-05 2.33278e-05 7.0276e-05 2.2689e-05 1.08098e-05 28
end_path:out1:RootOutput(write) 7.09714 8.00514 8.69463 8.06769 0.447611 28
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 4223.64 MB
Peak resident set size usage (VmHWM): 2330.25 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run039349_0038_df-s03-d1_dw_0_20250909T130354_reco_stage1_20250909T155427_keepup.root
\tHists: np02vd_raw_run039349_0038_df-s03-d1_dw_0_20250909T130354_reco_stage1_20250909T155430_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run039349_0038_df-s03-d1_dw_0_20250909T130354_reco_stage1_20250909T155427_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
conn = connection.create_connection(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
raise err
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
conn = self._new_conn()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x147753df1520>: Failed to establish a new connection: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run039349_0038_df-s03-d1_dw_0_20250909T130354.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x147753df1520>: Failed to establish a new connection: [Errno 110] Connection timed out'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run039349_0038_df-s03-d1_dw_0_20250909T130354.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x147753df1520>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata 