Jobsub ID 36968.26@dunegpschedd02.fnal.gov
| Jobsub ID | 36968.26@dunegpschedd02.fnal.gov |
| Workflow ID | 2365 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-09 13:39:07 |
| Site | UK_QMUL |
| Entry | DUNE_UK_London_QMUL_arcce02 |
| Last heartbeat | 2025-09-09 16:00:29 |
| From worker node | Hostname | cn520.htc.esc.qmul |
| cpuinfo | Intel(R) Xeon(R) Gold 6252 CPU @ 2.10GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-09 13:40:45 |
| Input files | vd-protodune:np02vd_raw_run039349_0031_df-s03-d2_dw_0_20250909T125506.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-09 16:00:29 |
| Saved logs | justin-logs:36968.26-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
-----------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 0.000109048 0.000153998 0.000436023 0.000139194 5.86286e-05 28
produce:tpcrawdecoder:PDVDTPCReader 28.0727 42.9862 59.9943 42.9482 8.8801 28
produce:triggerrawdecoder:PDVDTriggerReader4 0.0335123 0.0408795 0.0653169 0.0406658 0.00776937 28
produce:pdvddaphne:DAPHNEReaderPDVD 7.95369 11.4943 15.4729 11.161 1.69754 28
produce:ophit:OpHitFinder 0.0848034 0.100621 0.124291 0.100404 0.00999645 28
produce:opflash:OpFlashFinderVerticalDrift 0.0115523 0.0265448 0.0367496 0.0281849 0.00657705 28
produce:wclsdatavd:WireCellToolkit 89.6836 105.229 116.855 106.237 6.32971 28
produce:gaushit:GausHitFinder 1.13105 2.44738 3.67192 2.46316 0.667144 28
produce:nhitsfilter:NumberOfHitsFilter 0.000450719 0.000827877 0.00178732 0.000849072 0.000270821 28
produce:reco3d:SpacePointSolver 6.25752 16.88 33.014 16.8679 6.1928 28
produce:hitpdune:DisambigFromSpacePoints 0.136919 0.352664 0.842459 0.336685 0.156678 28
produce:pandora:StandardPandora 20.4911 90.5788 243.615 82.629 48.2841 28
produce:pandoraTrack:LArPandoraTrackCreation 0.255036 3.29088 6.04763 2.6994 1.63827 28
produce:pandoraGnocalo:GnocchiCalorimetry 0.0200056 0.0650131 0.120136 0.0587369 0.0211962 28
[art]:TriggerResults:TriggerResultInserter 5.3502e-05 0.000105567 0.000300523 0.000102142 4.10066e-05 28
end_path:out1:RootOutput 8.247e-06 2.93385e-05 9.6664e-05 2.8395e-05 1.54998e-05 28
end_path:out1:RootOutput(write) 6.40961 7.84108 8.9749 7.90041 0.534898 28
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 4403.4 MB
Peak resident set size usage (VmHWM): 2514.98 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run039349_0031_df-s03-d2_dw_0_20250909T125506_reco_stage1_20250909T155342_keepup.root
\tHists: np02vd_raw_run039349_0031_df-s03-d2_dw_0_20250909T125506_reco_stage1_20250909T155344_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run039349_0031_df-s03-d2_dw_0_20250909T125506_reco_stage1_20250909T155342_keepup.root
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
conn = connection.create_connection(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
raise err
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
conn = self._new_conn()
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x14c3542f1520>: Failed to establish a new connection: [Errno 110] Connection timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
resp = conn.urlopen(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run039349_0031_df-s03-d2_dw_0_20250909T125506.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x14c3542f1520>: Failed to establish a new connection: [Errno 110] Connection timed out'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/meta_maker.py", line 48, in <module>
results = inherit_metadata.inherit(args.parent)
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/inherit_metadata.py", line 72, in inherit
'metadata':get_parent_md(parent_name),
File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/inherit_metadata.py", line 27, in get_parent_md
parent_file = mc.get_file(did=parent_name, with_metadata=True,
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
return self.get_json(url)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
response = requests.get(url, timeout=self.Timeout, **args)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
return request('get', url, params=params, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
return session.request(method=method, url=url, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
resp = self.send(prep, **send_kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
r = adapter.send(request, **kwargs)
File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run039349_0031_df-s03-d2_dw_0_20250909T125506.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x14c3542f1520>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata 