Jobsub ID 40383.83@dunegpschedd02.fnal.gov
| Jobsub ID | 40383.83@dunegpschedd02.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:40:54 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc01 |
| Last heartbeat | 2025-09-16 13:27:54 |
| From worker node | Hostname | wn-da-08.gina.surf.nl |
| cpuinfo | AMD EPYC 7702P 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 11:42:55 |
| Input files | vd-protodune:np02vd_raw_run039275_0365_df-s01-d2_dw_0_20250902T025857.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:27:54 |
| Saved logs | justin-logs:40383.83-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
r ] Timer: wcls::RawFrameSource : 0 sec
[15:23:31.333] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[15:23:31.333] I [ timer ] Timer: Total node execution : 133.59000074490905 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 46865 traces tagged "gauss"
FrameSaver: q=8.18129e+06 n=1013997 tag=gauss
wclsFrameSaver: saving 56506 traces tagged "wiener"
FrameSaver: q=8.68155e+06 n=977840 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 93 XUs and 87 XVs -> 3 XUVs
C:0 T:1 600 XUs and 852 XVs -> 31 XUVs
C:0 T:2 791 XUs and 676 XVs -> 17 XUVs
C:0 T:3 288 XUs and 329 XVs -> 15 XUVs
C:0 T:4 579 XUs and 532 XVs -> 37 XUVs
C:0 T:5 695 XUs and 687 XVs -> 63 XUVs
C:0 T:6 208 XUs and 220 XVs -> 10 XUVs
C:0 T:7 335 XUs and 378 XVs -> 30 XUVs
C:0 T:8 10113 XUs and 20260 XVs -> 2702 XUVs
C:0 T:9 13334 XUs and 30870 XVs -> 4561 XUVs
C:0 T:10 6333 XUs and 23197 XVs -> 3098 XUVs
C:0 T:11 3350 XUs and 3074 XVs -> 126 XUVs
C:0 T:12 2139 XUs and 2539 XVs -> 236 XUVs
C:0 T:13 2083 XUs and 1504 XVs -> 116 XUVs
C:0 T:14 1147 XUs and 1472 XVs -> 94 XUVs
C:0 T:15 1924 XUs and 2097 XVs -> 170 XUVs
11309 XUVs total
1508 collection wire objects
11309 potential space points
Neighbour search...
1685465 tests to find 666096 neighbours
Iterating with no regularization...
Begin: 3.80042e+08
0 3.5323e+08
1 3.51432e+08
2 3.51006e+08
3 3.50838e+08
Now with regularization...
Begin: 3.44969e+08
0 3.44813e+08
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/25/20/np02vd_raw_run039275_0365_df-s01-d2_dw_0_20250902T025857.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x752f5630, total read size = 1130472, bytes this sub-read = 1130472, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 0.000125368 382.863 607.668 363.99 139.197 16
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 6.9361e-05 9.63024e-05 0.000201542 9.0632e-05 3.00058e-05 16
produce:tpcrawdecoder:PDVDTPCReader 52.6421 88.2138 143.131 86.7106 21.5017 15
produce:triggerrawdecoder:PDVDTriggerReader4 0.03623 0.0408445 0.0581586 0.037947 0.00567863 15
produce:pdvddaphne:DAPHNEReaderPDVD 12.5918 16.4192 30.6367 15.5152 4.17223 15
produce:ophit:OpHitFinder 0.0517553 0.0660434 0.0762857 0.0683068 0.00711955 15
produce:opflash:OpFlashFinderVerticalDrift 0.00961217 0.0160715 0.0206237 0.0169614 0.00323217 15
produce:wclsdatavd:WireCellToolkit 83.4051 139.265 162.882 143.147 20.848 15
produce:gaushit:GausHitFinder 1.5862 1.95362 2.8667 1.86498 0.34338 15
produce:nhitsfilter:NumberOfHitsFilter 0.000386863 0.000926474 0.00174444 0.000794858 0.000412033 15
produce:reco3d:SpacePointSolver 16.4738 23.6679 39.4185 23.3621 5.78788 15
produce:hitpdune:DisambigFromSpacePoints 0.219682 0.377393 0.60152 0.37546 0.109472 15
produce:pandora:StandardPandora 57.9012 129.753 308.562 97.7786 78.1105 15
produce:pandoraTrack:LArPandoraTrackCreation 1.18308 2.64703 4.72854 2.5599 0.940168 15
produce:pandoraGnocalo:GnocchiCalorimetry 0.0311189 0.0499317 0.0584662 0.0540219 0.00756589 15
[art]:TriggerResults:TriggerResultInserter 2.2763e-05 4.25219e-05 9.1063e-05 3.2512e-05 1.90611e-05 15
end_path:out1:RootOutput 5.059e-06 7.4114e-06 2.6992e-05 6.252e-06 5.27662e-06 15
end_path:out1:RootOutput(write) 5.57918 5.82571 6.10694 5.79985 0.165613 15
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5167.44 MB
Peak resident set size usage (VmHWM): 3280.47 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 131720
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 