Jobsub ID 40385.49@dunegpschedd02.fnal.gov
| Jobsub ID | 40385.49@dunegpschedd02.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:46:54 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc03 |
| Last heartbeat | 2025-09-16 13:28:00 |
| From worker node | Hostname | wn-la-24.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:21:52 |
| Input files | vd-protodune:np02vd_raw_run039275_0320_df-s05-d0_dw_0_20250902T015610.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:28:00 |
| Saved logs | justin-logs:40385.49-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
l::Gen::FrameFanout : 0 sec
[15:20:45.525] I [ timer ] Timer: wcls::RawFrameSource : 0 sec
[15:20:45.525] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[15:20:45.525] I [ timer ] Timer: Total node execution : 104.32999928295612 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 60521 traces tagged "gauss"
FrameSaver: q=1.1734e+07 n=1419894 tag=gauss
wclsFrameSaver: saving 74889 traces tagged "wiener"
FrameSaver: q=1.26687e+07 n=1371291 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 638 XUs and 514 XVs -> 31 XUVs
C:0 T:1 718 XUs and 781 XVs -> 24 XUVs
C:0 T:2 607 XUs and 600 XVs -> 20 XUVs
C:0 T:3 412 XUs and 285 XVs -> 18 XUVs
C:0 T:4 941 XUs and 655 XVs -> 32 XUVs
C:0 T:5 903 XUs and 746 XVs -> 56 XUVs
C:0 T:6 1086 XUs and 803 XVs -> 33 XUVs
C:0 T:7 361 XUs and 394 XVs -> 32 XUVs
C:0 T:8 27905 XUs and 46884 XVs -> 7411 XUVs
C:0 T:9 12025 XUs and 27617 XVs -> 3055 XUVs
C:0 T:10 15864 XUs and 36125 XVs -> 5783 XUVs
C:0 T:11 13847 XUs and 19034 XVs -> 4728 XUVs
C:0 T:12 7372 XUs and 10016 XVs -> 1375 XUVs
C:0 T:13 7321 XUs and 15315 XVs -> 1375 XUVs
C:0 T:14 9722 XUs and 23555 XVs -> 2094 XUVs
C:0 T:15 2056 XUs and 1918 XVs -> 112 XUVs
26179 XUVs total
2911 collection wire objects
26179 potential space points
Neighbour search...
3773113 tests to find 1567470 neighbours
Iterating with no regularization...
Begin: 5.6691e+08
0 4.65396e+08
1 4.5803e+08
2 4.5663e+08
3 4.56096e+08
4 4.55814e+08
Now with regularization...
Begin: 4.41538e+08
0 4.41128e+08
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/c8/48/np02vd_raw_run039275_0320_df-s05-d0_dw_0_20250902T015610.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x7cdcd0c0, total read size = 1108872, bytes this sub-read = 1108872, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 0.000100401 287.941 447.728 286.943 106.574 13
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 8.4216e-05 0.000129269 0.000455782 9.5233e-05 9.72185e-05 13
produce:tpcrawdecoder:PDVDTPCReader 60.2384 86.8197 112.278 90.0065 13.4548 12
produce:triggerrawdecoder:PDVDTriggerReader4 0.0359761 0.04041 0.0485943 0.0390589 0.00387098 12
produce:pdvddaphne:DAPHNEReaderPDVD 11.6066 14.6474 16.9263 14.7284 1.44846 12
produce:ophit:OpHitFinder 0.05909 0.0720643 0.101537 0.0704761 0.010582 12
produce:opflash:OpFlashFinderVerticalDrift 0.00702036 0.0147491 0.0205318 0.0140552 0.00385948 12
produce:wclsdatavd:WireCellToolkit 70.8968 90.5213 105.816 91.5405 11.819 12
produce:gaushit:GausHitFinder 0.684688 1.4906 2.07363 1.46358 0.401882 12
produce:nhitsfilter:NumberOfHitsFilter 0.000995851 0.00182223 0.00308179 0.00171842 0.000603331 12
produce:reco3d:SpacePointSolver 8.04781 20.932 29.3618 20.9202 6.43384 12
produce:hitpdune:DisambigFromSpacePoints 0.116173 0.325701 0.548513 0.300547 0.126237 12
produce:pandora:StandardPandora 22.2352 86.6496 224.367 65.4524 56.8569 12
produce:pandoraTrack:LArPandoraTrackCreation 1.19415 4.99155 9.52633 4.51219 2.58659 12
produce:pandoraGnocalo:GnocchiCalorimetry 0.0297251 0.0454692 0.0681015 0.0441168 0.0108445 12
[art]:TriggerResults:TriggerResultInserter 3.0586e-05 6.19446e-05 0.000137966 5.4797e-05 3.13006e-05 12
end_path:out1:RootOutput 7.751e-06 1.25962e-05 3.6013e-05 9.144e-06 7.65393e-06 12
end_path:out1:RootOutput(write) 4.88221 5.24148 5.48207 5.22705 0.180352 12
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5067.58 MB
Peak resident set size usage (VmHWM): 3181.38 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 115454
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 