Jobsub ID 40386.116@dunegpschedd02.fnal.gov
| Jobsub ID | 40386.116@dunegpschedd02.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:48:55 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc03 |
| Last heartbeat | 2025-09-16 13:27:59 |
| From worker node | Hostname | wn-la-10.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:39:36 |
| Input files | vd-protodune:np02vd_raw_run039275_0368_df-s03-d2_dw_0_20250902T030155.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:27:59 |
| Saved logs | justin-logs:40386.116-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
ples within desired window for channel 11579
wclsFrameSaver: no samples within desired window for channel 11919
wclsFrameSaver: no samples within desired window for channel 11919
wclsFrameSaver: no samples within desired window for channel 11920
wclsFrameSaver: no samples within desired window for channel 11921
wclsFrameSaver: no samples within desired window for channel 11921
wclsFrameSaver: no samples within desired window for channel 11922
wclsFrameSaver: no samples within desired window for channel 11922
FrameSaver: q=1.12906e+07 n=1228309 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 457 XUs and 702 XVs -> 32 XUVs
C:0 T:1 2668 XUs and 2032 XVs -> 126 XUVs
C:0 T:2 1829 XUs and 1395 XVs -> 189 XUVs
C:0 T:3 2284 XUs and 2044 XVs -> 130 XUVs
C:0 T:4 2282 XUs and 1853 XVs -> 320 XUVs
C:0 T:5 2135 XUs and 2125 XVs -> 248 XUVs
C:0 T:6 482 XUs and 645 XVs -> 26 XUVs
C:0 T:7 987 XUs and 2096 XVs -> 75 XUVs
C:0 T:8 13655 XUs and 40601 XVs -> 5928 XUVs
C:0 T:9 16020 XUs and 40646 XVs -> 4393 XUVs
C:0 T:10 13439 XUs and 23008 XVs -> 4857 XUVs
C:0 T:11 1735 XUs and 1787 XVs -> 142 XUVs
C:0 T:12 3061 XUs and 3461 XVs -> 149 XUVs
C:0 T:13 2315 XUs and 2761 XVs -> 193 XUVs
C:0 T:14 508 XUs and 522 XVs -> 55 XUVs
C:0 T:15 1372 XUs and 1240 XVs -> 84 XUVs
16947 XUVs total
2434 collection wire objects
16947 potential space points
Neighbour search...
2341589 tests to find 976108 neighbours
Iterating with no regularization...
Begin: 5.67845e+08
0 4.98028e+08
1 4.94026e+08
2 4.93421e+08
3 4.93203e+08
Now with regularization...
Begin: 4.83096e+08
0 4.82869e+08
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/d9/28/np02vd_raw_run039275_0368_df-s03-d2_dw_0_20250902T030155.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x5ed6ac80, total read size = 1108872, bytes this sub-read = 1108872, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 9.0725e-05 299.388 452.605 316.599 123.917 9
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.4091e-05 0.000104351 0.00028132 8.3754e-05 6.27908e-05 9
produce:tpcrawdecoder:PDVDTPCReader 64.4047 89.4041 123.422 84.4566 21.6474 8
produce:triggerrawdecoder:PDVDTriggerReader4 0.0359185 0.0407207 0.0516283 0.0384103 0.00522759 8
produce:pdvddaphne:DAPHNEReaderPDVD 10.556 13.1497 16.7297 12.8384 1.87205 8
produce:ophit:OpHitFinder 0.0424188 0.0681637 0.081998 0.0723438 0.012411 8
produce:opflash:OpFlashFinderVerticalDrift 0.00709041 0.0143147 0.0198495 0.0158131 0.00447533 8
produce:wclsdatavd:WireCellToolkit 64.9296 97.4506 121.522 97.7143 16.4168 8
produce:gaushit:GausHitFinder 1.13878 1.68049 1.94044 1.76241 0.238861 8
produce:nhitsfilter:NumberOfHitsFilter 0.000506015 0.00111398 0.00187712 0.00104947 0.000361336 8
produce:reco3d:SpacePointSolver 13.7041 24.1131 30.6517 25.1823 5.23277 8
produce:hitpdune:DisambigFromSpacePoints 0.196324 0.385164 0.631893 0.36357 0.129142 8
produce:pandora:StandardPandora 33.5865 100.393 191.114 89.969 52.0046 8
produce:pandoraTrack:LArPandoraTrackCreation 2.18129 3.44203 5.33357 2.98265 1.12495 8
produce:pandoraGnocalo:GnocchiCalorimetry 0.0313827 0.0463866 0.0604092 0.0479786 0.00848334 8
[art]:TriggerResults:TriggerResultInserter 3.0744e-05 6.15678e-05 0.000190174 4.20785e-05 4.92907e-05 8
end_path:out1:RootOutput 7.051e-06 1.10464e-05 3.2388e-05 7.9265e-06 8.09286e-06 8
end_path:out1:RootOutput(write) 5.16726 6.53377 7.17019 6.83627 0.751814 8
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 4995.23 MB
Peak resident set size usage (VmHWM): 3108.55 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 132648
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 