Jobsub ID 40386.92@dunegpschedd02.fnal.gov
| Jobsub ID | 40386.92@dunegpschedd02.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:48:55 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc02 |
| Last heartbeat | 2025-09-16 13:27:59 |
| From worker node | Hostname | wn-la-17.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:39:44 |
| Input files | vd-protodune:np02vd_raw_run039275_0371_df-s05-d1_dw_0_20250902T030456.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:27:59 |
| Saved logs | justin-logs:40386.92-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
tor : 0 sec
[15:23:29.952] I [ timer ] Timer: WireCell::Gen::Retagger : 0 sec
[15:23:29.952] I [ timer ] Timer: WireCell::Gen::FrameFanout : 0 sec
[15:23:29.952] I [ timer ] Timer: wcls::RawFrameSource : 0 sec
[15:23:29.952] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[15:23:29.952] I [ timer ] Timer: Total node execution : 66.63000012934208 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 54204 traces tagged "gauss"
FrameSaver: q=8.49489e+06 n=1073728 tag=gauss
wclsFrameSaver: saving 66012 traces tagged "wiener"
FrameSaver: q=9.06546e+06 n=1023256 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 1749 XUs and 1404 XVs -> 96 XUVs
C:0 T:1 852 XUs and 1077 XVs -> 34 XUVs
C:0 T:2 1978 XUs and 1276 XVs -> 68 XUVs
C:0 T:3 85 XUs and 120 XVs -> 3 XUVs
C:0 T:4 237 XUs and 366 XVs -> 12 XUVs
C:0 T:5 693 XUs and 455 XVs -> 32 XUVs
C:0 T:6 546 XUs and 693 XVs -> 33 XUVs
C:0 T:7 1153 XUs and 1273 XVs -> 73 XUVs
C:0 T:8 6722 XUs and 14409 XVs -> 1563 XUVs
C:0 T:9 4566 XUs and 4547 XVs -> 213 XUVs
C:0 T:10 1742 XUs and 1693 XVs -> 79 XUVs
C:0 T:11 874 XUs and 940 XVs -> 54 XUVs
C:0 T:12 2592 XUs and 2812 XVs -> 177 XUVs
C:0 T:13 2942 XUs and 3532 XVs -> 684 XUVs
C:0 T:14 5961 XUs and 5190 XVs -> 786 XUVs
C:0 T:15 12309 XUs and 19811 XVs -> 2149 XUVs
6056 XUVs total
1722 collection wire objects
6056 potential space points
Neighbour search...
588758 tests to find 266934 neighbours
Iterating with no regularization...
Begin: 5.83407e+08
0 5.47481e+08
1 5.40723e+08
2 5.40384e+08
Now with regularization...
Begin: 5.33019e+08
0 5.32845e+08
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/20/9a/np02vd_raw_run039275_0371_df-s05-d1_dw_0_20250902T030456.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x157d16e0, total read size = 1108872, bytes this sub-read = 1108872, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 7.397e-05 296.578 543.914 304.36 143.943 9
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.397e-05 9.4432e-05 0.000181431 8.3446e-05 3.20721e-05 9
produce:tpcrawdecoder:PDVDTPCReader 55.5729 79.5679 99.6767 79.2256 13.3163 8
produce:triggerrawdecoder:PDVDTriggerReader4 0.0371636 0.0455583 0.0557998 0.0438942 0.00672625 8
produce:pdvddaphne:DAPHNEReaderPDVD 10.6725 15.991 29.829 14.194 5.5509 8
produce:ophit:OpHitFinder 0.0477765 0.0673057 0.0822228 0.0667209 0.0120128 8
produce:opflash:OpFlashFinderVerticalDrift 0.010367 0.0165248 0.0202627 0.0175771 0.00310472 8
produce:wclsdatavd:WireCellToolkit 67.3482 81.4095 96.1744 78.6768 9.36781 8
produce:gaushit:GausHitFinder 1.02146 1.71058 2.20692 1.91899 0.459478 8
produce:nhitsfilter:NumberOfHitsFilter 0.000735173 0.00144627 0.00237412 0.00130548 0.000563946 8
produce:reco3d:SpacePointSolver 11.8286 23.7417 34.0222 26.8001 7.44557 8
produce:hitpdune:DisambigFromSpacePoints 0.147213 0.374051 0.610803 0.420309 0.144903 8
produce:pandora:StandardPandora 32.3694 120.688 303.541 122.109 81.8828 8
produce:pandoraTrack:LArPandoraTrackCreation 2.03891 4.2348 6.2514 4.75389 1.50496 8
produce:pandoraGnocalo:GnocchiCalorimetry 0.0293223 0.0450928 0.0568403 0.0466766 0.00891545 8
[art]:TriggerResults:TriggerResultInserter 3.1957e-05 6.66421e-05 0.000216314 5.05005e-05 5.71402e-05 8
end_path:out1:RootOutput 5.889e-06 1.54069e-05 4.9765e-05 8.874e-06 1.42201e-05 8
end_path:out1:RootOutput(write) 4.94532 5.63208 7.19984 5.4504 0.730355 8
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 4964.59 MB
Peak resident set size usage (VmHWM): 3075.21 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 133735
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 