Jobsub ID 40387.85@dunegpschedd02.fnal.gov
| Jobsub ID | 40387.85@dunegpschedd02.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:50:55 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc02 |
| Last heartbeat | 2025-09-16 13:27:34 |
| From worker node | Hostname | wn-db-11.gina.surf.nl |
| cpuinfo | AMD EPYC 7702P 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:55:30 |
| Input files | vd-protodune:np02vd_raw_run039275_0389_df-s03-d0_dw_0_20250902T032310.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:27:34 |
| Saved logs | justin-logs:40387.85-dunegpschedd02.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
pFrames : 0 sec
[15:24:11.676] I [ timer ] Timer: WireCell::SigProc::ChannelSelector : 0 sec
[15:24:11.676] I [ timer ] Timer: WireCell::Gen::FrameFanout : 0 sec
[15:24:11.676] I [ timer ] Timer: wcls::RawFrameSource : 0 sec
[15:24:11.676] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[15:24:11.676] I [ timer ] Timer: Total node execution : 65.25999978929758 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 38413 traces tagged "gauss"
FrameSaver: q=6.37069e+06 n=801795 tag=gauss
wclsFrameSaver: saving 47046 traces tagged "wiener"
FrameSaver: q=6.76539e+06 n=773372 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 246 XUs and 181 XVs -> 12 XUVs
C:0 T:1 20 XUs and 24 XVs -> 0 XUVs
C:0 T:2 307 XUs and 315 XVs -> 10 XUVs
C:0 T:3 241 XUs and 305 XVs -> 15 XUVs
C:0 T:4 354 XUs and 402 XVs -> 30 XUVs
C:0 T:5 725 XUs and 766 XVs -> 24 XUVs
C:0 T:6 546 XUs and 833 XVs -> 37 XUVs
C:0 T:7 225 XUs and 220 XVs -> 7 XUVs
C:0 T:8 5093 XUs and 8237 XVs -> 2288 XUVs
C:0 T:9 1524 XUs and 1244 XVs -> 301 XUVs
C:0 T:10 1048 XUs and 1681 XVs -> 135 XUVs
C:0 T:11 730 XUs and 1388 XVs -> 49 XUVs
C:0 T:12 3070 XUs and 2681 XVs -> 408 XUVs
C:0 T:13 4496 XUs and 5245 XVs -> 294 XUVs
C:0 T:14 1686 XUs and 2265 XVs -> 95 XUVs
C:0 T:15 1358 XUs and 1667 XVs -> 178 XUVs
3883 XUVs total
1189 collection wire objects
3883 potential space points
Neighbour search...
527631 tests to find 215498 neighbours
Iterating with no regularization...
Begin: 4.15395e+08
0 3.93361e+08
1 3.92561e+08
2 3.92495e+08
Now with regularization...
Begin: 3.8144e+08
0 3.81412e+08
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/4c/c1/np02vd_raw_run039275_0389_df-s03-d0_dw_0_20250902T032310.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x4405cda0, total read size = 1108872, bytes this sub-read = 1108872, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 6.743e-05 216.724 295.539 235.806 87.7067 8
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 5.9203e-05 8.42395e-05 0.00021451 6.61515e-05 4.95456e-05 8
produce:tpcrawdecoder:PDVDTPCReader 65.1037 86.0891 109.118 80.3735 17.8102 7
produce:triggerrawdecoder:PDVDTriggerReader4 0.0340742 0.0401087 0.0549452 0.0364918 0.00759438 7
produce:pdvddaphne:DAPHNEReaderPDVD 9.02635 12.0175 15.7555 12.0288 1.95626 7
produce:ophit:OpHitFinder 0.0485754 0.0546823 0.0614718 0.0536844 0.00442563 7
produce:opflash:OpFlashFinderVerticalDrift 0.0106512 0.0153535 0.0221429 0.0149154 0.00372179 7
produce:wclsdatavd:WireCellToolkit 61.9521 71.4439 87.0578 69.8985 7.38667 7
produce:gaushit:GausHitFinder 1.06077 1.32151 1.56252 1.26534 0.170675 7
produce:nhitsfilter:NumberOfHitsFilter 0.000253475 0.000370822 0.000580779 0.000363274 0.000102273 7
produce:reco3d:SpacePointSolver 11.6444 15.9252 20.2461 15 3.07922 7
produce:hitpdune:DisambigFromSpacePoints 0.151891 0.228199 0.30888 0.231218 0.0472279 7
produce:pandora:StandardPandora 34.9202 54.3084 76.3538 58.8974 16.2416 7
produce:pandoraTrack:LArPandoraTrackCreation 0.831586 1.20977 1.68629 1.04444 0.306795 7
produce:pandoraGnocalo:GnocchiCalorimetry 0.0208875 0.0316101 0.0389471 0.0310475 0.00592477 7
[art]:TriggerResults:TriggerResultInserter 1.6631e-05 2.43219e-05 5.1248e-05 2.135e-05 1.11371e-05 7
end_path:out1:RootOutput 3.867e-06 6.68814e-06 2.0709e-05 4.498e-06 5.73516e-06 7
end_path:out1:RootOutput(write) 4.70643 4.95923 5.15361 4.96305 0.136753 7
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 4847.46 MB
Peak resident set size usage (VmHWM): 2961.63 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 140186
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 