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Jobsub ID 43079.151@dunegpschedd01.fnal.gov

Jobsub ID43079.151@dunegpschedd01.fnal.gov
Workflow ID2329
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod.mcsim
RequestedProcessors1
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-09-08 12:07:57
SiteNL_NIKHEF
EntryVIRGO_NL_NIKHEF_dissel
Last heartbeat2025-09-08 15:52:47
From worker nodeHostnamewn-snel-025.farm.nikhef.nl
cpuinfoAMD EPYC 7H12 64-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes4194304000 (4000 MiB)
Wall seconds limit129600 (36 hours)
GPU
Inner Apptainer?True
Job stateoutputting_failed
Started2025-09-08 15:03:13
Input filesvd-protodune:np02vd_raw_run039324_2830_df-s01-d2_dw_0_20250908T030027.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-09-08 15:52:47
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

--------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                      5.1947e-05    7.12053e-05   0.000188013   6.75625e-05   2.43859e-05      26     
produce:tpcrawdecoder:PDVDTPCReader               13.292        14.5487       17.825        14.1249       1.23934        26     
produce:triggerrawdecoder:PDVDTriggerReader4     0.0349494     0.036942      0.0825573     0.0350449    0.00912529       26     
produce:pdvddaphne:DAPHNEReaderPDVD               2.94449       3.23984       3.52204       3.25416      0.166305        26     
produce:ophit:OpHitFinder                        0.0255257     0.0350067     0.0389653     0.0358101    0.00282153       26     
produce:opflash:OpFlashFinderVerticalDrift       0.005153     0.00991559     0.0155408     0.0104742    0.00229416       26     
produce:wclsdatavd:WireCellToolkit                34.9626       41.2267       60.5642       38.5968       6.78139        26     
produce:gaushit:GausHitFinder                    0.390417      0.965367       1.53767      0.954397      0.249883        26     
produce:nhitsfilter:NumberOfHitsFilter          0.000103084   0.000288708   0.000581472   0.000268259   0.000110248      26     
produce:reco3d:SpacePointSolver                   2.64741       9.82646       16.6012       9.56178       3.34706        26     
produce:hitpdune:DisambigFromSpacePoints         0.0406065     0.139915      0.275656      0.124088      0.058716        26     
produce:pandora:StandardPandora                   8.56976       37.9695       79.6063       37.065        15.9928        26     
produce:pandoraTrack:LArPandoraTrackCreation     0.107144      0.511115       1.06878      0.501668      0.221712        26     
produce:pandoraGnocalo:GnocchiCalorimetry       0.00910783     0.020753      0.0341467     0.0195828    0.00597337       26     
[art]:TriggerResults:TriggerResultInserter      1.1842e-05    1.63718e-05   4.5947e-05    1.5409e-05    6.06949e-06      26     
end_path:out1:RootOutput                         3.115e-06    4.28181e-06   1.7483e-05     3.687e-06    2.6769e-06       26     
end_path:out1:RootOutput(write)                   2.99813       3.38963       4.68907       3.22745      0.479042        26     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 4684.19 MB
  Peak resident set size usage (VmHWM): 2803.86 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run039324_2830_df-s01-d2_dw_0_20250908T030027_reco_stage1_20250908T155224_keepup.root
\tHists: np02vd_raw_run039324_2830_df-s01-d2_dw_0_20250908T030027_reco_stage1_20250908T155224_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run039324_2830_df-s01-d2_dw_0_20250908T030027_reco_stage1_20250908T155224_keepup.root
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
    conn = connection.create_connection(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
    raise err
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
    sock.connect(sa)
ConnectionRefusedError: [Errno 111] Connection refused

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
    conn = self._new_conn()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
    raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x153e29931520>: Failed to establish a new connection: [Errno 111] Connection refused

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run039324_2830_df-s01-d2_dw_0_20250908T030027.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x153e29931520>: Failed to establish a new connection: [Errno 111] Connection refused'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/20943968d0063a8f11ac6a4062b5ad0c8392b138/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run039324_2830_df-s01-d2_dw_0_20250908T030027.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x153e29931520>: Failed to establish a new connection: [Errno 111] Connection refused'))
Error in reco metadata
justIN time: 2025-09-18 19:29:31 UTC       justIN version: 01.05.00