Jobsub ID 46970.153@dunegpschedd01.fnal.gov
| Jobsub ID | 46970.153@dunegpschedd01.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:44:54 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc03 |
| Last heartbeat | 2025-09-16 13:27:57 |
| From worker node | Hostname | wn-lb-02.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:12:55 |
| Input files | vd-protodune:np02vd_raw_run039275_0335_df-s04-d0_dw_0_20250902T022412.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:27:57 |
| Saved logs | justin-logs:46970.153-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
red window for channel 10417
wclsFrameSaver: no samples within desired window for channel 10441
wclsFrameSaver: no samples within desired window for channel 10724
wclsFrameSaver: no samples within desired window for channel 10877
wclsFrameSaver: no samples within desired window for channel 10883
wclsFrameSaver: no samples within desired window for channel 10964
wclsFrameSaver: no samples within desired window for channel 10977
wclsFrameSaver: no samples within desired window for channel 11169
FrameSaver: q=7.8752e+06 n=1025721 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 730 XUs and 803 XVs -> 24 XUVs
C:0 T:1 1143 XUs and 1412 XVs -> 26 XUVs
C:0 T:2 956 XUs and 1158 XVs -> 56 XUVs
C:0 T:3 527 XUs and 741 XVs -> 30 XUVs
C:0 T:4 1473 XUs and 1635 XVs -> 50 XUVs
C:0 T:5 639 XUs and 712 XVs -> 50 XUVs
C:0 T:6 924 XUs and 1256 XVs -> 54 XUVs
C:0 T:7 584 XUs and 742 XVs -> 23 XUVs
C:0 T:8 2018 XUs and 3598 XVs -> 79 XUVs
C:0 T:9 1101 XUs and 1114 XVs -> 48 XUVs
C:0 T:10 2649 XUs and 2488 XVs -> 187 XUVs
C:0 T:11 840 XUs and 894 XVs -> 46 XUVs
C:0 T:12 2855 XUs and 2775 XVs -> 135 XUVs
C:0 T:13 751 XUs and 853 XVs -> 54 XUVs
C:0 T:14 2818 XUs and 2628 XVs -> 140 XUVs
C:0 T:15 687 XUs and 540 XVs -> 44 XUVs
1046 XUVs total
921 collection wire objects
1046 potential space points
Neighbour search...
6874 tests to find 2836 neighbours
Iterating with no regularization...
Begin: 3.68514e+08
0 3.62172e+08
1 3.62072e+08
Now with regularization...
Begin: 3.57935e+08
0 3.57931e+08
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/21/72/np02vd_raw_run039275_0335_df-s04-d0_dw_0_20250902T022412.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x77f24dd0, total read size = 1130472, bytes this sub-read = 1130472, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 0.000110725 390.507 806.546 375.117 189.524 11
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 8.1954e-05 0.000109231 0.000277404 9.2769e-05 5.38196e-05 11
produce:tpcrawdecoder:PDVDTPCReader 71.8657 101.785 143.24 98.7471 18.5262 10
produce:triggerrawdecoder:PDVDTriggerReader4 0.0341637 0.0414206 0.0590722 0.0384134 0.00719102 10
produce:pdvddaphne:DAPHNEReaderPDVD 12.2173 15.6261 19.0195 15.9332 2.01812 10
produce:ophit:OpHitFinder 0.0689266 0.0797108 0.0874699 0.0821716 0.00626757 10
produce:opflash:OpFlashFinderVerticalDrift 0.0152304 0.018883 0.022752 0.0187835 0.00228062 10
produce:wclsdatavd:WireCellToolkit 82.2412 112.959 132.423 115.142 16.1078 10
produce:gaushit:GausHitFinder 1.38392 1.98964 2.86838 1.94501 0.400384 10
produce:nhitsfilter:NumberOfHitsFilter 0.000641077 0.00135867 0.00217807 0.00131945 0.000460459 10
produce:reco3d:SpacePointSolver 16.8042 28.8482 45.0156 28.9275 8.43235 10
produce:hitpdune:DisambigFromSpacePoints 0.211316 0.45775 0.725861 0.473203 0.17416 10
produce:pandora:StandardPandora 45.0416 154.721 488.496 120.053 123.664 10
produce:pandoraTrack:LArPandoraTrackCreation 2.77629 5.82981 10.5909 4.58487 2.70403 10
produce:pandoraGnocalo:GnocchiCalorimetry 0.0360685 0.0569226 0.0733233 0.0625497 0.011655 10
[art]:TriggerResults:TriggerResultInserter 4.5538e-05 8.29887e-05 0.000233288 6.6238e-05 5.2939e-05 10
end_path:out1:RootOutput 8.082e-06 1.40029e-05 3.994e-05 1.0645e-05 9.10435e-06 10
end_path:out1:RootOutput(write) 6.68292 7.01766 7.43543 6.98276 0.249871 10
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5103.42 MB
Peak resident set size usage (VmHWM): 3217.31 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 120810
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 