Jobsub ID 46970.58@dunegpschedd01.fnal.gov
| Jobsub ID | 46970.58@dunegpschedd01.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:44:54 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc03 |
| Last heartbeat | 2025-09-16 13:28:08 |
| From worker node | Hostname | wn-la-01.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:07:48 |
| Input files | vd-protodune:np02vd_raw_run039275_0365_df-s02-d1_dw_0_20250902T025849.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:28:08 |
| Saved logs | justin-logs:46970.58-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
o samples within desired window for channel 11890
wclsFrameSaver: no samples within desired window for channel 11890
wclsFrameSaver: no samples within desired window for channel 11890
wclsFrameSaver: no samples within desired window for channel 11891
wclsFrameSaver: no samples within desired window for channel 11891
wclsFrameSaver: no samples within desired window for channel 11893
wclsFrameSaver: no samples within desired window for channel 11893
FrameSaver: q=1.13981e+07 n=1146684 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 8 XUs and 7 XVs -> 0 XUVs
C:0 T:1 131 XUs and 130 XVs -> 6 XUVs
C:0 T:2 117 XUs and 160 XVs -> 7 XUVs
C:0 T:3 887 XUs and 977 XVs -> 35 XUVs
C:0 T:4 678 XUs and 1013 XVs -> 46 XUVs
C:0 T:5 3171 XUs and 3515 XVs -> 272 XUVs
C:0 T:6 331 XUs and 430 XVs -> 22 XUVs
C:0 T:7 968 XUs and 803 XVs -> 45 XUVs
C:0 T:8 26664 XUs and 60656 XVs -> 9969 XUVs
C:0 T:9 13119 XUs and 56135 XVs -> 3617 XUVs
C:0 T:10 14798 XUs and 47341 XVs -> 5323 XUVs
C:0 T:11 1073 XUs and 872 XVs -> 74 XUVs
C:0 T:12 2303 XUs and 2906 XVs -> 479 XUVs
C:0 T:13 1574 XUs and 2151 XVs -> 99 XUVs
C:0 T:14 2526 XUs and 2637 XVs -> 102 XUVs
C:0 T:15 10286 XUs and 9553 XVs -> 511 XUVs
20607 XUVs total
2643 collection wire objects
20607 potential space points
Neighbour search...
2737513 tests to find 1121562 neighbours
Iterating with no regularization...
Begin: 9.72725e+08
0 8.57924e+08
1 8.49349e+08
2 8.47993e+08
3 8.47497e+08
Now with regularization...
Begin: 8.3089e+08
0 8.30487e+08
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/9a/db/np02vd_raw_run039275_0365_df-s02-d1_dw_0_20250902T025849.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x11fc6e50, total read size = 1108872, bytes this sub-read = 1108872, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 0.000104867 305.919 415.944 330.497 96.7994 15
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.7727e-05 0.000116736 0.000387091 9.6665e-05 7.3492e-05 15
produce:tpcrawdecoder:PDVDTPCReader 59.5612 79.2429 128.048 75.4656 16.2098 14
produce:triggerrawdecoder:PDVDTriggerReader4 0.0340107 0.0453944 0.104658 0.0400231 0.0171091 14
produce:pdvddaphne:DAPHNEReaderPDVD 11.429 14.1216 19.4857 13.8027 1.91802 14
produce:ophit:OpHitFinder 0.0412437 0.0647048 0.0821336 0.0632328 0.0130688 14
produce:opflash:OpFlashFinderVerticalDrift 0.00599243 0.0150396 0.0218733 0.0154466 0.00417802 14
produce:wclsdatavd:WireCellToolkit 80.475 98.502 117.456 97.1098 9.62512 14
produce:gaushit:GausHitFinder 0.822306 1.55418 1.99212 1.61605 0.305186 14
produce:nhitsfilter:NumberOfHitsFilter 0.00135978 0.00189691 0.00307374 0.00171647 0.000500887 14
produce:reco3d:SpacePointSolver 9.31534 21.7509 30.2938 22.6689 5.47882 14
produce:hitpdune:DisambigFromSpacePoints 0.120031 0.369848 0.565262 0.399347 0.120049 14
produce:pandora:StandardPandora 21.9051 99.9914 170.502 101.372 46.4174 14
produce:pandoraTrack:LArPandoraTrackCreation 1.48905 6.4551 9.91406 6.82693 2.28913 14
produce:pandoraGnocalo:GnocchiCalorimetry 0.028057 0.0542617 0.0732065 0.0587234 0.0136532 14
[art]:TriggerResults:TriggerResultInserter 3.5783e-05 7.86556e-05 0.000129313 7.673e-05 2.19636e-05 14
end_path:out1:RootOutput 6.961e-06 1.38054e-05 3.1457e-05 1.2258e-05 6.36275e-06 14
end_path:out1:RootOutput(write) 4.90035 5.43597 6.22296 5.37821 0.273949 14
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5135.95 MB
Peak resident set size usage (VmHWM): 3192.83 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:15 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 131683
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 