Jobsub ID 46972.145@dunegpschedd01.fnal.gov
| Jobsub ID | 46972.145@dunegpschedd01.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:54:56 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc02 |
| Last heartbeat | 2025-09-16 13:27:51 |
| From worker node | Hostname | wn-da-10.gina.surf.nl |
| cpuinfo | AMD EPYC 7702P 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:39:10 |
| Input files | vd-protodune:np02vd_raw_run039275_0369_df-s03-d0_dw_0_20250902T030301.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:27:51 |
| Saved logs | justin-logs:46972.145-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
Saver: no samples within desired window for channel 12053
wclsFrameSaver: no samples within desired window for channel 12053
wclsFrameSaver: no samples within desired window for channel 12054
wclsFrameSaver: no samples within desired window for channel 12054
wclsFrameSaver: no samples within desired window for channel 12055
wclsFrameSaver: no samples within desired window for channel 12055
wclsFrameSaver: no samples within desired window for channel 12056
FrameSaver: q=9.66177e+06 n=1061415 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 1255 XUs and 1319 XVs -> 80 XUVs
C:0 T:1 2113 XUs and 3062 XVs -> 95 XUVs
C:0 T:2 704 XUs and 1920 XVs -> 74 XUVs
C:0 T:3 493 XUs and 830 XVs -> 30 XUVs
C:0 T:4 206 XUs and 228 XVs -> 13 XUVs
C:0 T:5 293 XUs and 523 XVs -> 35 XUVs
C:0 T:6 818 XUs and 1211 XVs -> 78 XUVs
C:0 T:7 247 XUs and 369 XVs -> 12 XUVs
C:0 T:8 26848 XUs and 58471 XVs -> 12480 XUVs
C:0 T:9 2718 XUs and 5994 XVs -> 309 XUVs
C:0 T:10 1154 XUs and 1323 XVs -> 90 XUVs
C:0 T:11 2508 XUs and 2333 XVs -> 122 XUVs
C:0 T:12 2578 XUs and 2406 XVs -> 211 XUVs
C:0 T:13 674 XUs and 904 XVs -> 63 XUVs
C:0 T:14 6083 XUs and 5577 XVs -> 222 XUVs
C:0 T:15 19075 XUs and 33401 XVs -> 5436 XUVs
19350 XUVs total
1737 collection wire objects
19350 potential space points
Neighbour search...
3638024 tests to find 1400956 neighbours
Iterating with no regularization...
Begin: 6.42847e+08
0 6.00505e+08
1 5.98292e+08
2 5.97891e+08
Now with regularization...
Begin: 5.85549e+08
0 5.85289e+08
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/5c/02/np02vd_raw_run039275_0369_df-s03-d0_dw_0_20250902T030301.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x6e8bc690, total read size = 1137672, bytes this sub-read = 1137672, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 0.000107554 306.357 613.773 301.644 150.801 9
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 6.6467e-05 9.41361e-05 0.000220269 7.6277e-05 4.60263e-05 9
produce:tpcrawdecoder:PDVDTPCReader 57.2875 82.1582 100.637 78.8068 14.3148 8
produce:triggerrawdecoder:PDVDTriggerReader4 0.037296 0.045336 0.0539182 0.0463561 0.00660106 8
produce:pdvddaphne:DAPHNEReaderPDVD 12.7224 14.628 18.7889 13.7035 2.14697 8
produce:ophit:OpHitFinder 0.0554723 0.0635894 0.0691035 0.0655933 0.00464558 8
produce:opflash:OpFlashFinderVerticalDrift 0.0109391 0.0164765 0.0231259 0.0153814 0.00362293 8
produce:wclsdatavd:WireCellToolkit 72.0896 88.4952 112.26 86.694 11.0913 8
produce:gaushit:GausHitFinder 1.21436 1.91005 2.46377 1.84973 0.394248 8
produce:nhitsfilter:NumberOfHitsFilter 0.000534037 0.000869871 0.00145986 0.000705789 0.000336973 8
produce:reco3d:SpacePointSolver 11.8891 24.7424 34.4403 23.2037 7.16303 8
produce:hitpdune:DisambigFromSpacePoints 0.171747 0.379658 0.532853 0.352738 0.118594 8
produce:pandora:StandardPandora 42.5953 124.049 335.657 95.5583 84.8238 8
produce:pandoraTrack:LArPandoraTrackCreation 0.809717 2.26297 3.76472 2.15068 0.891255 8
produce:pandoraGnocalo:GnocchiCalorimetry 0.0312393 0.0479506 0.0651302 0.0473568 0.0111712 8
[art]:TriggerResults:TriggerResultInserter 2.1822e-05 5.69448e-05 9.8297e-05 5.99745e-05 2.45884e-05 8
end_path:out1:RootOutput 5.24e-06 1.06788e-05 2.9906e-05 7.6195e-06 7.6897e-06 8
end_path:out1:RootOutput(write) 5.42631 5.78672 6.19353 5.74344 0.220908 8
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5119.29 MB
Peak resident set size usage (VmHWM): 3230.73 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 133006
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 