Jobsub ID 46972.70@dunegpschedd01.fnal.gov
| Jobsub ID | 46972.70@dunegpschedd01.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:54:56 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc03 |
| Last heartbeat | 2025-09-16 13:28:06 |
| From worker node | Hostname | wn-lb-04.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:26:20 |
| Input files | vd-protodune:np02vd_raw_run039275_0327_df-s02-d2_dw_0_20250902T020905.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:28:06 |
| Saved logs | justin-logs:46972.70-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
NING: Could not find offline channel for 10 0 14
WARNING: Could not find offline channel for 10 0 17
WARNING: Could not find offline channel for 10 0 22
WARNING: Could not find offline channel for 10 0 30
WARNING: Could not find offline channel for 10 0 32
WARNING: Could not find offline channel for 10 0 36
WARNING: Could not find offline channel for 10 0 7
WARNING: Could not find offline channel for 10 0 12
WARNING: Could not find offline channel for 10 0 14
WARNING: Could not find offline channel for 10 0 6
WARNING: Could not find offline channel for 10 0 7
WARNING: Could not find offline channel for 10 0 10
WARNING: Could not find offline channel for 10 0 12
WARNING: Could not find offline channel for 10 0 14
WARNING: Could not find offline channel for 10 0 17
WARNING: Could not find offline channel for 10 0 0
WARNING: Could not find offline channel for 10 0 2
WARNING: Could not find offline channel for 10 0 4
WARNING: Could not find offline channel for 10 0 6
WARNING: Could not find offline channel for 10 0 7
WARNING: Could not find offline channel for 10 0 12
WARNING: Could not find offline channel for 10 0 7
WARNING: Could not find offline channel for 10 0 12
WARNING: Could not find offline channel for 10 0 14
WARNING: Could not find offline channel for 10 0 26
WARNING: Could not find offline channel for 10 0 32
WARNING: Could not find offline channel for 10 0 0
WARNING: Could not find offline channel for 10 0 2
WARNING: Could not find offline channel for 10 0 6
WARNING: Could not find offline channel for 10 0 17
WARNING: Could not find offline channel for 10 0 26
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:34 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/56/86/np02vd_raw_run039275_0327_df-s02-d2_dw_0_20250902T020905.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x23b16e50, total read size = 3457472, bytes this sub-read = 3457472, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 7.1145e-05 234.669 440.914 203.416 105.128 15
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.1145e-05 9.59556e-05 0.00028062 7.7335e-05 5.23911e-05 15
produce:tpcrawdecoder:PDVDTPCReader 14.3519 17.297 51.7025 14.891 9.20021 15
produce:triggerrawdecoder:PDVDTriggerReader4 0.0332271 0.0375473 0.0484874 0.0370005 0.00313007 15
produce:pdvddaphne:DAPHNEReaderPDVD 5.55444 6.18924 6.71938 6.16531 0.328472 14
produce:ophit:OpHitFinder 0.0411494 0.0535631 0.0680149 0.0528847 0.00858593 14
produce:opflash:OpFlashFinderVerticalDrift 0.0067306 0.0122849 0.0168659 0.0135158 0.00346118 14
produce:wclsdatavd:WireCellToolkit 74.8918 94.5404 109.427 94.8273 9.0096 14
produce:gaushit:GausHitFinder 0.687958 1.4676 2.06544 1.37908 0.384615 14
produce:nhitsfilter:NumberOfHitsFilter 0.000692767 0.00121026 0.00186014 0.00122313 0.000316279 14
produce:reco3d:SpacePointSolver 8.93818 21.5155 33.3146 20.8858 7.06887 14
produce:hitpdune:DisambigFromSpacePoints 0.115728 0.331651 0.629754 0.295525 0.146941 14
produce:pandora:StandardPandora 18.3205 100.4 273.642 72.8637 76.5109 14
produce:pandoraTrack:LArPandoraTrackCreation 1.30685 4.05333 7.71958 3.70073 1.80402 14
produce:pandoraGnocalo:GnocchiCalorimetry 0.0260942 0.0434672 0.0586143 0.0437292 0.00885905 14
[art]:TriggerResults:TriggerResultInserter 3.1067e-05 4.52019e-05 8.5187e-05 3.84125e-05 1.55907e-05 14
end_path:out1:RootOutput 6.56e-06 9.64236e-06 3.2188e-05 7.6865e-06 6.36395e-06 14
end_path:out1:RootOutput(write) 4.77611 5.20691 5.55086 5.18141 0.223904 14
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5179.74 MB
Peak resident set size usage (VmHWM): 3294.03 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:34 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module DAPHNEReaderPDVD/pdvddaphne run: 39275 subRun: 1 event: 118004
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 