Jobsub ID 46973.111@dunegpschedd01.fnal.gov
| Jobsub ID | 46973.111@dunegpschedd01.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:56:55 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc01 |
| Last heartbeat | 2025-09-16 13:27:52 |
| From worker node | Hostname | wn-da-04.gina.surf.nl |
| cpuinfo | AMD EPYC 7702P 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:48:35 |
| Input files | vd-protodune:np02vd_raw_run039275_0384_df-s02-d3_dw_0_20250902T031809.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:27:52 |
| Saved logs | justin-logs:46973.111-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
tor : 0 sec
[15:24:27.311] I [ timer ] Timer: WireCell::Gen::Retagger : 0 sec
[15:24:27.311] I [ timer ] Timer: WireCell::Gen::FrameFanout : 0 sec
[15:24:27.311] I [ timer ] Timer: wcls::RawFrameSource : 0 sec
[15:24:27.311] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[15:24:27.311] I [ timer ] Timer: Total node execution : 99.83999987319112 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 44165 traces tagged "gauss"
FrameSaver: q=6.62343e+06 n=869285 tag=gauss
wclsFrameSaver: saving 55115 traces tagged "wiener"
FrameSaver: q=7.04536e+06 n=820998 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 269 XUs and 435 XVs -> 15 XUVs
C:0 T:1 2662 XUs and 3325 XVs -> 118 XUVs
C:0 T:2 1161 XUs and 1632 XVs -> 72 XUVs
C:0 T:3 1115 XUs and 1630 XVs -> 69 XUVs
C:0 T:4 197 XUs and 286 XVs -> 14 XUVs
C:0 T:5 706 XUs and 581 XVs -> 21 XUVs
C:0 T:6 233 XUs and 261 XVs -> 25 XUVs
C:0 T:7 301 XUs and 494 XVs -> 16 XUVs
C:0 T:8 9704 XUs and 17985 XVs -> 4180 XUVs
C:0 T:9 2539 XUs and 2663 XVs -> 305 XUVs
C:0 T:10 1528 XUs and 1977 XVs -> 119 XUVs
C:0 T:11 1154 XUs and 1422 XVs -> 116 XUVs
C:0 T:12 2923 XUs and 4132 XVs -> 313 XUVs
C:0 T:13 1670 XUs and 2104 XVs -> 359 XUVs
C:0 T:14 3406 XUs and 5943 XVs -> 399 XUVs
C:0 T:15 1822 XUs and 1696 XVs -> 93 XUVs
6234 XUVs total
1506 collection wire objects
6234 potential space points
Neighbour search...
862474 tests to find 362586 neighbours
Iterating with no regularization...
Begin: 3.05199e+08
0 2.73418e+08
1 2.71797e+08
2 2.71548e+08
Now with regularization...
Begin: 2.63379e+08
0 2.63247e+08
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/92/00/np02vd_raw_run039275_0384_df-s02-d3_dw_0_20250902T031809.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x63be2260, total read size = 1108872, bytes this sub-read = 1108872, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 8.9161e-05 308.416 609.039 353.321 171.302 7
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 6.5695e-05 8.7627e-05 0.000121351 7.848e-05 2.05451e-05 7
produce:tpcrawdecoder:PDVDTPCReader 61.8467 84.2857 99.7783 86.0541 13.7443 6
produce:triggerrawdecoder:PDVDTriggerReader4 0.0339784 0.03654 0.039037 0.0362789 0.00163907 6
produce:pdvddaphne:DAPHNEReaderPDVD 9.69242 13.9124 28.259 11.1211 6.52894 6
produce:ophit:OpHitFinder 0.0534596 0.0647989 0.0690013 0.0666381 0.00542744 6
produce:opflash:OpFlashFinderVerticalDrift 0.0133304 0.0186802 0.0273117 0.0179012 0.00435741 6
produce:wclsdatavd:WireCellToolkit 92.4373 106.735 129.487 104.525 13.3794 6
produce:gaushit:GausHitFinder 1.03771 1.88227 2.87562 1.92005 0.602998 6
produce:nhitsfilter:NumberOfHitsFilter 0.000353423 0.000688518 0.000997419 0.000713008 0.00021416 6
produce:reco3d:SpacePointSolver 7.90874 23.2576 41.4312 23.7311 10.4724 6
produce:hitpdune:DisambigFromSpacePoints 0.101412 0.354531 0.620162 0.340694 0.165913 6
produce:pandora:StandardPandora 21.3505 121.312 312.769 112.969 95.4364 6
produce:pandoraTrack:LArPandoraTrackCreation 0.420227 1.95074 4.35862 1.75214 1.23694 6
produce:pandoraGnocalo:GnocchiCalorimetry 0.0201794 0.0442201 0.0621293 0.0451636 0.013482 6
[art]:TriggerResults:TriggerResultInserter 2.1971e-05 4.27378e-05 0.000108175 2.90905e-05 3.02831e-05 6
end_path:out1:RootOutput 4.418e-06 1.0358e-05 3.689e-05 5.2e-06 1.18748e-05 6
end_path:out1:RootOutput(write) 5.27252 5.89958 6.47262 5.9863 0.376439 6
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5072.09 MB
Peak resident set size usage (VmHWM): 3179.84 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 138365
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 