Jobsub ID 46973.179@dunegpschedd01.fnal.gov
| Jobsub ID | 46973.179@dunegpschedd01.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:56:55 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc02 |
| Last heartbeat | 2025-09-16 13:28:05 |
| From worker node | Hostname | wn-da-05.gina.surf.nl |
| cpuinfo | AMD EPYC 7702P 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:55:13 |
| Input files | vd-protodune:np02vd_raw_run039275_0389_df-s04-d2_dw_0_20250902T032311.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:28:05 |
| Saved logs | justin-logs:46973.179-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
] Timer: WireCell::SigProc::ChannelSelector : 0 sec
[15:22:19.871] I [ timer ] Timer: wcls::RawFrameSource : 0 sec
[15:22:19.871] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[15:22:19.871] I [ timer ] Timer: Total node execution : 89.9800003040582 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 60683 traces tagged "gauss"
FrameSaver: q=1.07972e+07 n=1320215 tag=gauss
wclsFrameSaver: saving 74124 traces tagged "wiener"
FrameSaver: q=1.14247e+07 n=1275141 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 294 XUs and 370 XVs -> 13 XUVs
C:0 T:1 780 XUs and 1285 XVs -> 55 XUVs
C:0 T:2 382 XUs and 419 XVs -> 7 XUVs
C:0 T:3 216 XUs and 250 XVs -> 24 XUVs
C:0 T:4 1619 XUs and 2610 XVs -> 112 XUVs
C:0 T:5 222 XUs and 307 XVs -> 12 XUVs
C:0 T:6 1289 XUs and 2300 XVs -> 53 XUVs
C:0 T:7 1582 XUs and 1439 XVs -> 73 XUVs
C:0 T:8 15060 XUs and 33034 XVs -> 3402 XUVs
C:0 T:9 4962 XUs and 5807 XVs -> 737 XUVs
C:0 T:10 1177 XUs and 1783 XVs -> 258 XUVs
C:0 T:11 860 XUs and 1032 XVs -> 52 XUVs
C:0 T:12 8989 XUs and 10369 XVs -> 697 XUVs
C:0 T:13 1806 XUs and 1804 XVs -> 100 XUVs
C:0 T:14 3057 XUs and 3833 XVs -> 336 XUVs
C:0 T:15 11547 XUs and 14805 XVs -> 940 XUVs
6871 XUVs total
2200 collection wire objects
6871 potential space points
Neighbour search...
403677 tests to find 186136 neighbours
Iterating with no regularization...
Begin: 7.25801e+08
0 6.50641e+08
1 6.45312e+08
2 6.44535e+08
3 6.44293e+08
Now with regularization...
Begin: 6.30411e+08
0 6.30239e+08
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/11/47/np02vd_raw_run039275_0389_df-s04-d2_dw_0_20250902T032311.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x66114860, total read size = 1101672, bytes this sub-read = 1101672, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 7.905e-05 291.282 423.678 316.853 139.715 6
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.5032e-05 0.000102789 0.000207355 8.2081e-05 4.71236e-05 6
produce:tpcrawdecoder:PDVDTPCReader 61.2281 91.3841 118.28 95.6808 22.4886 5
produce:triggerrawdecoder:PDVDTriggerReader4 0.0346147 0.0364222 0.0375325 0.0364482 0.00101946 5
produce:pdvddaphne:DAPHNEReaderPDVD 13.3636 14.7494 16.4471 14.6644 1.18337 5
produce:ophit:OpHitFinder 0.0608352 0.0682446 0.0785672 0.0689228 0.00660319 5
produce:opflash:OpFlashFinderVerticalDrift 0.0180033 0.0198138 0.0234505 0.0192629 0.00190393 5
produce:wclsdatavd:WireCellToolkit 76.2807 93.7871 114.173 92.3343 12.1546 5
produce:gaushit:GausHitFinder 1.44084 1.99341 2.39751 2.02265 0.309676 5
produce:nhitsfilter:NumberOfHitsFilter 0.000471317 0.000878113 0.00138723 0.000902558 0.000316066 5
produce:reco3d:SpacePointSolver 16.3221 24.7501 31.0798 25.2758 4.76068 5
produce:hitpdune:DisambigFromSpacePoints 0.240149 0.379147 0.521522 0.365489 0.0904352 5
produce:pandora:StandardPandora 49.4402 114.15 154.912 131.18 39.7135 5
produce:pandoraTrack:LArPandoraTrackCreation 1.04603 2.10204 2.55648 2.3441 0.548061 5
produce:pandoraGnocalo:GnocchiCalorimetry 0.0370846 0.0492406 0.0636217 0.0487962 0.00867036 5
[art]:TriggerResults:TriggerResultInserter 2.1702e-05 3.18348e-05 6.777e-05 2.2692e-05 1.79901e-05 5
end_path:out1:RootOutput 5.511e-06 9.7508e-06 2.5088e-05 6.161e-06 7.67481e-06 5
end_path:out1:RootOutput(write) 5.69899 5.98648 6.2257 5.99113 0.174627 5
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 4942.2 MB
Peak resident set size usage (VmHWM): 3053.31 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 140152
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 