Jobsub ID 46973.183@dunegpschedd01.fnal.gov
| Jobsub ID | 46973.183@dunegpschedd01.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:56:55 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc02 |
| Last heartbeat | 2025-09-16 13:28:05 |
| From worker node | Hostname | wn-da-05.gina.surf.nl |
| cpuinfo | AMD EPYC 7702P 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:54:50 |
| Input files | vd-protodune:np02vd_raw_run039275_0390_df-s02-d3_dw_0_20250902T032409.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:28:05 |
| Saved logs | justin-logs:46973.183-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
ed window for channel 11283
wclsFrameSaver: no samples within desired window for channel 11284
wclsFrameSaver: no samples within desired window for channel 11969
wclsFrameSaver: no samples within desired window for channel 12082
wclsFrameSaver: no samples within desired window for channel 12082
wclsFrameSaver: no samples within desired window for channel 12082
FrameSaver: q=1.5088e+07 n=1589334 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 2662 XUs and 3011 XVs -> 117 XUVs
C:0 T:1 1290 XUs and 875 XVs -> 47 XUVs
C:0 T:2 1378 XUs and 1564 XVs -> 45 XUVs
C:0 T:3 312 XUs and 462 XVs -> 24 XUVs
C:0 T:4 681 XUs and 711 XVs -> 47 XUVs
C:0 T:5 236 XUs and 391 XVs -> 22 XUVs
C:0 T:6 446 XUs and 565 XVs -> 39 XUVs
C:0 T:7 2118 XUs and 2829 XVs -> 77 XUVs
C:0 T:8 36940 XUs and 60467 XVs -> 9697 XUVs
C:0 T:9 20274 XUs and 35642 XVs -> 3093 XUVs
C:0 T:10 15290 XUs and 29182 XVs -> 4958 XUVs
C:0 T:11 1175 XUs and 929 XVs -> 55 XUVs
C:0 T:12 5779 XUs and 6371 XVs -> 492 XUVs
C:0 T:13 1953 XUs and 2584 XVs -> 122 XUVs
C:0 T:14 1447 XUs and 1353 XVs -> 62 XUVs
C:0 T:15 3295 XUs and 3035 XVs -> 131 XUVs
19028 XUVs total
3198 collection wire objects
19028 potential space points
Neighbour search...
2509936 tests to find 1082990 neighbours
Iterating with no regularization...
Begin: 1.21073e+09
0 1.07226e+09
1 1.06149e+09
2 1.06018e+09
3 1.05972e+09
Now with regularization...
Begin: 1.04046e+09
0 1.04011e+09
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/51/dd/np02vd_raw_run039275_0390_df-s02-d3_dw_0_20250902T032409.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x3968f2a0, total read size = 1137672, bytes this sub-read = 1137672, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 8.7886e-05 448.711 781.996 506.424 305.486 4
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.4722e-05 0.000111522 0.000208447 8.14595e-05 5.62112e-05 4
produce:tpcrawdecoder:PDVDTPCReader 80.5335 98.1057 110.73 103.054 12.8145 3
produce:triggerrawdecoder:PDVDTriggerReader4 0.0376627 0.0437659 0.0545984 0.0390367 0.00768024 3
produce:pdvddaphne:DAPHNEReaderPDVD 13.4577 16.113 18.8649 16.0164 2.20851 3
produce:ophit:OpHitFinder 0.0740703 0.0772276 0.0818734 0.075739 0.00335497 3
produce:opflash:OpFlashFinderVerticalDrift 0.0167271 0.019275 0.0223699 0.0187281 0.00233594 3
produce:wclsdatavd:WireCellToolkit 94.9993 116.951 139 116.854 17.9632 3
produce:gaushit:GausHitFinder 1.9809 2.52754 3.03292 2.56882 0.430476 3
produce:nhitsfilter:NumberOfHitsFilter 0.00066247 0.00148043 0.00216187 0.00161695 0.000619694 3
produce:reco3d:SpacePointSolver 25.7488 35.7599 42.7684 38.7624 7.26536 3
produce:hitpdune:DisambigFromSpacePoints 0.385383 0.601727 0.780346 0.639454 0.163435 3
produce:pandora:StandardPandora 93.2245 317.636 479.856 379.828 163.853 3
produce:pandoraTrack:LArPandoraTrackCreation 2.31917 4.00285 7.06618 2.6232 2.16966 3
produce:pandoraGnocalo:GnocchiCalorimetry 0.0591483 0.0640412 0.0679427 0.0650325 0.0036581 3
[art]:TriggerResults:TriggerResultInserter 2.6451e-05 5.80107e-05 0.000100751 4.683e-05 3.13462e-05 3
end_path:out1:RootOutput 5.852e-06 1.2724e-05 2.5808e-05 6.512e-06 9.25571e-06 3
end_path:out1:RootOutput(write) 6.00051 6.25994 6.5094 6.2699 0.207873 3
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5244.37 MB
Peak resident set size usage (VmHWM): 3356.75 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 140465
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 