Jobsub ID 46973.50@dunegpschedd01.fnal.gov
| Jobsub ID | 46973.50@dunegpschedd01.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 11:56:55 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc01 |
| Last heartbeat | 2025-09-16 13:27:42 |
| From worker node | Hostname | wn-la-07.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 12:47:03 |
| Input files | vd-protodune:np02vd_raw_run039275_0381_df-s03-d2_dw_0_20250902T031505.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:27:42 |
| Saved logs | justin-logs:46973.50-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
er ] Timer: WireCell::Gen::FrameFanout : 0 sec
[15:24:19.857] I [ timer ] Timer: wcls::RawFrameSource : 0 sec
[15:24:19.857] I [ timer ] Timer: wcls::FrameSaver : 0 sec
[15:24:19.857] I [ timer ] Timer: Total node execution : 85.55000097118318 sec
wclsFrameSaver saving cooked to 10000 ticks
wclsFrameSaver: saving 49371 traces tagged "gauss"
FrameSaver: q=8.26938e+06 n=1018894 tag=gauss
wclsFrameSaver: saving 61478 traces tagged "wiener"
FrameSaver: q=8.89226e+06 n=971503 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 920 XUs and 1036 XVs -> 54 XUVs
C:0 T:1 1101 XUs and 1397 XVs -> 64 XUVs
C:0 T:2 741 XUs and 599 XVs -> 23 XUVs
C:0 T:3 1171 XUs and 1943 XVs -> 133 XUVs
C:0 T:4 591 XUs and 975 XVs -> 66 XUVs
C:0 T:5 1005 XUs and 1345 XVs -> 65 XUVs
C:0 T:6 1329 XUs and 2272 XVs -> 147 XUVs
C:0 T:7 166 XUs and 258 XVs -> 11 XUVs
C:0 T:8 6787 XUs and 6085 XVs -> 453 XUVs
C:0 T:9 10801 XUs and 10558 XVs -> 1360 XUVs
C:0 T:10 15664 XUs and 23569 XVs -> 2519 XUVs
C:0 T:11 4693 XUs and 3017 XVs -> 460 XUVs
C:0 T:12 5586 XUs and 8055 XVs -> 1060 XUVs
C:0 T:13 1884 XUs and 2018 XVs -> 72 XUVs
C:0 T:14 1833 XUs and 2001 XVs -> 90 XUVs
C:0 T:15 5027 XUs and 8317 XVs -> 581 XUVs
7158 XUVs total
2359 collection wire objects
7158 potential space points
Neighbour search...
568082 tests to find 271272 neighbours
Iterating with no regularization...
Begin: 6.32736e+08
0 5.51282e+08
1 5.46339e+08
2 5.4565e+08
3 5.45452e+08
Now with regularization...
Begin: 5.33699e+08
0 5.33556e+08
BdtBeamParticleIdTool::SliceFeatures::GetLeadingCaloHits - empty calo hit list
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/e3/dc/np02vd_raw_run039275_0381_df-s03-d2_dw_0_20250902T031505.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0x61940d40, total read size = 1137672, bytes this sub-read = 1137672, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 8.2924e-05 252.139 498.272 248.844 118.816 9
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 7.338e-05 0.000107552 0.000287862 8.3315e-05 6.43778e-05 9
produce:tpcrawdecoder:PDVDTPCReader 55.0017 69.4012 103.96 59.6101 16.7708 8
produce:triggerrawdecoder:PDVDTriggerReader4 0.036564 0.0389465 0.0470774 0.0373698 0.00335882 8
produce:pdvddaphne:DAPHNEReaderPDVD 10.1732 11.919 13.5914 11.95 1.37028 8
produce:ophit:OpHitFinder 0.0426928 0.061992 0.0780719 0.06909 0.013291 8
produce:opflash:OpFlashFinderVerticalDrift 0.00622495 0.0135189 0.025291 0.0121569 0.00536376 8
produce:wclsdatavd:WireCellToolkit 74.8651 88.4457 99.0342 88.1671 7.18886 8
produce:gaushit:GausHitFinder 1.0502 1.39938 2.1837 1.30749 0.333519 8
produce:nhitsfilter:NumberOfHitsFilter 0.000690286 0.00120677 0.00226044 0.00103025 0.00052193 8
produce:reco3d:SpacePointSolver 14.3214 20.0879 39.1047 17.1148 7.63346 8
produce:hitpdune:DisambigFromSpacePoints 0.208652 0.338949 0.693191 0.266453 0.154945 8
produce:pandora:StandardPandora 31.5063 81.025 241.853 64.118 62.943 8
produce:pandoraTrack:LArPandoraTrackCreation 3.50625 5.50829 12.0738 4.50123 2.64203 8
produce:pandoraGnocalo:GnocchiCalorimetry 0.0348454 0.0503514 0.080499 0.0500345 0.0145452 8
[art]:TriggerResults:TriggerResultInserter 2.5498e-05 6.16324e-05 0.00013416 5.5198e-05 3.09805e-05 8
end_path:out1:RootOutput 6.449e-06 1.29394e-05 3.0655e-05 1.07065e-05 7.07803e-06 8
end_path:out1:RootOutput(write) 5.03936 5.23044 5.87981 5.12444 0.255315 8
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 5048.14 MB
Peak resident set size usage (VmHWM): 3157.05 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 137328
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 