Jobsub ID 46974.72@dunegpschedd01.fnal.gov
| Jobsub ID | 46974.72@dunegpschedd01.fnal.gov |
| Workflow ID | 2650 |
| Stage ID | 1 |
| User name | ykermaid@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2025-09-16 12:02:55 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc01 |
| Last heartbeat | 2025-09-16 13:27:48 |
| From worker node | Hostname | wn-la-24.gina.surf.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Started | 2025-09-16 13:01:37 |
| Input files | vd-protodune:np02vd_raw_run039275_0397_df-s05-d5_dw_0_20250902T033113.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Max RSS bytes | 0 (0 MiB) |
| Outputting started | |
| Output files | |
| Finished | 2025-09-16 13:27:48 |
| Saved logs | justin-logs:46974.72-dunegpschedd01.fnal.gov.logs.tgz |
| List job events Cached HTCondor job logs |
Jobscript log (last 10,000 characters)
wclsFrameSaver: no samples within desired window for channel 11187
wclsFrameSaver: no samples within desired window for channel 11188
wclsFrameSaver: no samples within desired window for channel 11192
wclsFrameSaver: no samples within desired window for channel 11202
wclsFrameSaver: no samples within desired window for channel 11202
wclsFrameSaver: no samples within desired window for channel 11202
wclsFrameSaver: no samples within desired window for channel 11203
wclsFrameSaver: no samples within desired window for channel 11203
FrameSaver: q=1.20766e+07 n=1327658 tag=wiener
0 X, 0 U, 0 V bad channels
Finding XUV coincidences...
C:0 T:0 242 XUs and 411 XVs -> 6 XUVs
C:0 T:1 608 XUs and 214 XVs -> 9 XUVs
C:0 T:2 710 XUs and 1259 XVs -> 58 XUVs
C:0 T:3 1403 XUs and 1054 XVs -> 102 XUVs
C:0 T:4 1635 XUs and 1057 XVs -> 103 XUVs
C:0 T:5 2504 XUs and 2148 XVs -> 81 XUVs
C:0 T:6 1805 XUs and 1863 XVs -> 69 XUVs
C:0 T:7 866 XUs and 1124 XVs -> 23 XUVs
C:0 T:8 9572 XUs and 12183 XVs -> 986 XUVs
C:0 T:9 8647 XUs and 13377 XVs -> 1766 XUVs
C:0 T:10 9706 XUs and 12258 XVs -> 1108 XUVs
C:0 T:11 1128 XUs and 1559 XVs -> 147 XUVs
C:0 T:12 5733 XUs and 5587 XVs -> 1018 XUVs
C:0 T:13 1644 XUs and 1898 XVs -> 132 XUVs
C:0 T:14 4559 XUs and 2126 XVs -> 176 XUVs
C:0 T:15 2497 XUs and 4194 XVs -> 324 XUVs
6108 XUVs total
2008 collection wire objects
6108 potential space points
Neighbour search...
497698 tests to find 236006 neighbours
Iterating with no regularization...
Begin: 1.18313e+09
0 1.09818e+09
1 1.09377e+09
2 1.09323e+09
Now with regularization...
Begin: 1.08291e+09
0 1.08266e+09
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 179 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 2011 in H5VL_dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 1978 in H5VL__dataset_read(): dataset read failed
major: Virtual Object Layer
minor: Read failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_dataset.c line 166 in H5VL__native_dataset_read(): can't read data
major: Dataset
minor: Read failed
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dio.c line 545 in H5D__read(): can't read data
major: Dataset
minor: Read failed
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 600 in H5D__contig_read(): contiguous read failed
major: Dataset
minor: Read failed
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 465 in H5D__select_read(): read error
major: Dataspace
minor: Read failed
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dselect.c line 220 in H5D__select_io(): read error
major: Dataspace
minor: Read failed
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 924 in H5D__contig_readvv(): can't perform vectorized sieve buffer read
major: Dataset
minor: Can't operate on object
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VM.c line 1401 in H5VM_opvv(): can't perform operation
major: Internal error (too specific to document in detail)
minor: Can't operate on object
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Dcontig.c line 729 in H5D__contig_readvv_sieve_cb(): block read failed
major: Dataset
minor: Read failed
#011: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fio.c line 105 in H5F_shared_block_read(): read through page buffer failed
major: Low-level I/O
minor: Read failed
#012: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PB.c line 721 in H5PB_read(): read through metadata accumulator failed
major: Page Buffering
minor: Read failed
#013: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Faccum.c line 252 in H5F__accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#014: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDint.c line 189 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#015: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 755 in H5FD__sec2_read(): file read failed: time = Tue Sep 16 15:27:10 2025
, filename = 'root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/vd-protodune/23/ab/np02vd_raw_run039275_0397_df-s05-d5_dw_0_20250902T033113.hdf5', file descriptor = 24, errno = 113, error message = 'No route to host', buf = 0xedb33a0, total read size = 1101672, bytes this sub-read = 1101672, bytes actually read = 18446744073709551615, offset = 0
major: Low-level I/O
minor: Read failed
==================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
==================================================================================================================================
Full event 8.4807e-05 226.766 352.735 246.656 114.392 6
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 8.2693e-05 0.000149854 0.0003342 0.000115553 8.78867e-05 6
produce:tpcrawdecoder:PDVDTPCReader 63.5248 70.5184 89.5713 66.981 9.64509 5
produce:triggerrawdecoder:PDVDTriggerReader4 0.0347654 0.0373419 0.0392872 0.0376669 0.00167051 5
produce:pdvddaphne:DAPHNEReaderPDVD 9.59794 11.7721 15.7271 10.99 2.10695 5
produce:ophit:OpHitFinder 0.0599168 0.0750796 0.0911842 0.0746569 0.00992229 5
produce:opflash:OpFlashFinderVerticalDrift 0.0117196 0.015484 0.0180113 0.0162391 0.0023237 5
produce:wclsdatavd:WireCellToolkit 74.5383 88.5236 104.769 84.8056 11.5117 5
produce:gaushit:GausHitFinder 0.829801 1.31737 1.59566 1.40239 0.286564 5
produce:nhitsfilter:NumberOfHitsFilter 0.000973336 0.00195983 0.00315203 0.00190092 0.000704495 5
produce:reco3d:SpacePointSolver 8.7949 19.1415 24.0999 23.252 5.99852 5
produce:hitpdune:DisambigFromSpacePoints 0.127617 0.320214 0.427079 0.33852 0.109936 5
produce:pandora:StandardPandora 20.3839 69.4759 125.118 57.4718 41.0514 5
produce:pandoraTrack:LArPandoraTrackCreation 3.21025 5.44708 7.941 6.16245 1.81959 5
produce:pandoraGnocalo:GnocchiCalorimetry 0.0342599 0.0481571 0.0602 0.0478859 0.00993967 5
[art]:TriggerResults:TriggerResultInserter 3.6754e-05 7.44034e-05 0.000143385 7.4571e-05 3.86072e-05 5
end_path:out1:RootOutput 7.261e-06 1.9085e-05 5.0176e-05 1.0997e-05 1.5846e-05 5
end_path:out1:RootOutput(write) 5.16849 5.30795 5.41839 5.32146 0.0977981 5
==================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 4907.79 MB
Peak resident set size usage (VmHWM): 3019.76 MB
Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException: PostEndJob 16-Sep-2025 15:27:11 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
EventProcessor: an exception occurred during current event processing
---- ScheduleExecutionFailure BEGIN
Path: ProcessingStopped.
---- StdException BEGIN
An exception was thrown while processing module PDVDTPCReader/tpcrawdecoder run: 39275 subRun: 1 event: 143059
Error during HDF5 Read:
---- StdException END
Exception going through path produce
---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1 