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Jobsub ID 47393.1@dunegpschedd01.fnal.gov

Jobsub ID47393.1@dunegpschedd01.fnal.gov
Workflow ID2576
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors1
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-09-17 07:10:54
SiteNL_NIKHEF
EntryVIRGO_NL_NIKHEF_juk
Last heartbeat2025-09-17 07:42:08
From worker nodeHostnamewn-snel-026.farm.nikhef.nl
cpuinfoAMD EPYC 7H12 64-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes4194304000 (4000 MiB)
Wall seconds limit129600 (36 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2025-09-17 07:12:33
Input filesvd-protodune:np02vd_raw_run039275_0094_df-s03-d3_dw_0_20250901T181110.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-09-17 07:42:08
Saved logsjustin-logs:47393.1-dunegpschedd01.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

lse
%MSG
%MSG-e OpHitFinder:  OpHitFinder:ophit@BeginModule 17-Sep-2025 09:40:11 CEST  run: 39275 subRun: 1 event: 33929
Error! unrecognized channel number -1. Ignoring pulse
%MSG
%MSG-e OpHitFinder:  OpHitFinder:ophit@BeginModule 17-Sep-2025 09:40:11 CEST  run: 39275 subRun: 1 event: 33929
Error! unrecognized channel number -1. Ignoring pulse
%MSG
%MSG-e OpHitFinder:  OpHitFinder:ophit@BeginModule 17-Sep-2025 09:40:11 CEST  run: 39275 subRun: 1 event: 33929
Error! unrecognized channel number -1. Ignoring pulse
%MSG
%MSG-e OpHitFinder:  OpHitFinder:ophit@BeginModule 17-Sep-2025 09:40:11 CEST  run: 39275 subRun: 1 event: 33929
Error! unrecognized channel number -1. Ignoring pulse
%MSG
%MSG-e OpHitFinder:  OpHitFinder:ophit@BeginModule 17-Sep-2025 09:40:11 CEST  run: 39275 subRun: 1 event: 33929
Error! unrecognized channel number -1. Ignoring pulse
%MSG
RawFrameSource: got 12288 raw::RawDigit objects
	input nticks=10000 keeping as is
[09:40:11.217] D [  main  ] executing 1 apps, thread limit 0:
[09:40:11.217] D [  main  ] executing 1 apps, thread limit 0:
[09:40:11.217] D [  main  ] executing app: "Pgrapher"
[09:40:11.217] D [ pgraph ] <Pgrapher:> executing graph 
[09:40:11.217] D [ pgraph ] executing with 26 nodes
[09:40:11.219] D [  glue  ] <FrameFanout:nfsp> call=8: input: frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig" ] 0 tagged trace sets:[ ] cmm:[ ] output 0: frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig0" ] 0 tagged trace sets:[ ] cmm:[ ] output 1: frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig1" ] 0 tagged trace sets:[ ] cmm:[ ] output 2: frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig2" ] 0 tagged trace sets:[ ] cmm:[ ] output 3: frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig3" ] 0 tagged trace sets:[ ] cmm:[ ] output 4: frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig4" ] 0 tagged trace sets:[ ] cmm:[ ] output 5: frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig5" ] 0 tagged trace sets:[ ] cmm:[ ] output 6: frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig6" ] 0 tagged trace sets:[ ] cmm:[ ] output 7: frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig7" ] 0 tagged trace sets:[ ] cmm:[ ]  
[09:40:11.219] W [  glue  ] <ChannelSelector:chsel7> Untagged summary not supported, summary will be dropped. 
[09:40:11.220] D [  glue  ] <ChannelSelector:chsel7> input frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig7" ] 0 tagged trace sets:[ ] cmm:[ ] output: frame: ident=33929 time=23 tick=512 with 1536 traces.  frame tags:[ "orig7" ] 0 tagged trace sets:[ ] cmm:[ ] 
[09:40:11.220] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 input frame: frame: ident=33929 time=23 tick=512 with 1536 traces.  frame tags:[ "orig7" ] 0 tagged trace sets:[ ] cmm:[ ] 
[09:40:11.220] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 init nticks=10000 tbinmin=0 tbinmax=10000 
[09:40:11.264] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 load plane index: 0, ntraces=1536, input bad regions: 0 
[09:40:12.918] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 load plane index: 1, ntraces=1536, input bad regions: 0 
[09:40:14.624] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 load plane index: 2, ntraces=1536, input bad regions: 0 
[09:40:49.877] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 save plane index: 0, Qtot=99367238328 Qloss=-1913033995, 7431 indices spanning [50007,57437] "wiener" 
[09:40:50.064] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 save plane index: 0, Qtot=99266646181 Qloss=-1924521084, 5980 indices spanning [57438,63417] "gauss" 
[09:40:50.948] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 save plane index: 1, Qtot=2181966003 Qloss=-328915940, 17624 indices spanning [63418,81041] "wiener" 
[09:40:51.138] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 save plane index: 1, Qtot=1985145432 Qloss=-320987379, 14143 indices spanning [81042,95184] "gauss" 
[09:40:51.508] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 save plane index: 2, Qtot=1422127204 Qloss=-37860298, 13697 indices spanning [95185,108881] "wiener" 
[09:40:51.869] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 save plane index: 2, Qtot=1393566003 Qloss=-17321315, 10762 indices spanning [108882,119643] "gauss" 
[09:40:51.869] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 produce 119644 traces: 38752 wiener7, 0 decon_charge7, 30885 gauss7, frame tag: sigproc 
[09:40:51.869] D [sigproc ] <OmnibusSigProc:anode7sigproc7> call=8 output frame: frame: ident=33929 time=23 tick=512 with 119644 traces.  frame tags:[ "sigproc" ] 4 tagged trace sets:[ "gauss7":30885 [0] "mp2_roi7":34688 [0] "mp3_roi7":15319 [0] "wiener7":38752 [38752] ] cmm:[ ] 
[09:40:58.242] W [  glue  ] <ChannelSelector:chsel6> Untagged summary not supported, summary will be dropped. 
[09:40:58.243] D [  glue  ] <ChannelSelector:chsel6> input frame: ident=33929 time=23 tick=512 with 12288 traces.  frame tags:[ "orig6" ] 0 tagged trace sets:[ ] cmm:[ ] output: frame: ident=33929 time=23 tick=512 with 1536 traces.  frame tags:[ "orig6" ] 0 tagged trace sets:[ ] cmm:[ ] 
[09:40:58.243] D [sigproc ] <OmnibusSigProc:anode6sigproc6> call=8 input frame: frame: ident=33929 time=23 tick=512 with 1536 traces.  frame tags:[ "orig6" ] 0 tagged trace sets:[ ] cmm:[ ] 
[09:40:58.243] D [sigproc ] <OmnibusSigProc:anode6sigproc6> call=8 init nticks=10000 tbinmin=0 tbinmax=10000 
[09:40:58.272] D [sigproc ] <OmnibusSigProc:anode6sigproc6> call=8 load plane index: 0, ntraces=1536, input bad regions: 0 
[09:40:59.989] D [sigproc ] <OmnibusSigProc:anode6sigproc6> call=8 load plane index: 1, ntraces=1536, input bad regions: 0 
[09:41:02.001] D [sigproc ] <OmnibusSigProc:anode6sigproc6> call=8 load plane index: 2, ntraces=1536, input bad regions: 0 

==================================================================================================================================
TimeTracker printout (sec)                          Min           Avg           Max         Median          RMS         nEvts   
==================================================================================================================================
Full event                                      7.7705e-05      285.904       399.35        349.012       144.726         5     
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                      7.4439e-05    0.000115298   0.000268102   7.7705e-05    7.64267e-05       5     
produce:tpcrawdecoder:PDVDTPCReader               168.545       174.882       179.15        175.522       3.6097          5     
produce:triggerrawdecoder:PDVDTriggerReader4     0.0343055     0.0379211     0.0505888     0.0346514    0.00634837        5     
produce:pdvddaphne:DAPHNEReaderPDVD               20.1509       21.7426       23.2937       21.7265       1.06093         5     
produce:ophit:OpHitFinder                        0.0643545     0.0783691     0.0930051     0.0746805     0.0117427        5     
produce:opflash:OpFlashFinderVerticalDrift       0.0140989     0.0210686     0.0391591     0.0157519    0.00940224        5     
produce:wclsdatavd:WireCellToolkit                61.2631       72.2066       79.9091       73.8271       7.23356         4     
produce:gaushit:GausHitFinder                     1.24494       1.39555       1.70181       1.31772       0.18047         4     
produce:nhitsfilter:NumberOfHitsFilter          0.000502932    0.0007934    0.000925362   0.000872653   0.000169236       4     
produce:reco3d:SpacePointSolver                   14.1626       17.7205       22.9474       16.8861       3.34143         4     
produce:hitpdune:DisambigFromSpacePoints         0.217371      0.274597      0.421461      0.229777      0.0850102        4     
produce:pandora:StandardPandora                   52.7202       62.9666       86.898        56.1242       13.9156         4     
produce:pandoraTrack:LArPandoraTrackCreation     0.869292       1.13717       1.49161       1.09389      0.246927         4     
produce:pandoraGnocalo:GnocchiCalorimetry        0.0294303     0.0363677     0.040746      0.0376472    0.00472996        4     
[art]:TriggerResults:TriggerResultInserter      1.6902e-05    2.74065e-05   5.4151e-05    1.92865e-05   1.54741e-05       4     
end_path:out1:RootOutput                         4.919e-06    9.58325e-06   2.3144e-05     5.135e-06    7.82981e-06       4     
end_path:out1:RootOutput(write)                   4.69193       4.85919       5.24662       4.74911       0.22498         4     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 8589.88 MB
  Peak resident set size usage (VmHWM): 6710.05 MB
  Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException:  PostEndJob 17-Sep-2025 09:41:47 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
  EventProcessor: an exception occurred during current event processing
  ---- ScheduleExecutionFailure BEGIN
    Path: ProcessingStopped.
    ---- BadAlloc BEGIN
      A bad_alloc exception was thrown while processing module WireCellToolkit/wclsdatavd run: 39275 subRun: 1 event: 33929
      The job has probably exhausted the virtual memory available to the process.
    ---- BadAlloc END
    Exception going through path produce
  ---- ScheduleExecutionFailure END
---- EventProcessorFailure END
%MSG
Art has completed and will exit with status 1.
Error in reco1
justIN time: 2025-09-19 00:21:20 UTC       justIN version: 01.05.00