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Jobsub ID 236737.148@dunegpschedd02.fnal.gov

Jobsub ID236737.148@dunegpschedd02.fnal.gov
Workflow ID9538
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors2
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-11-03 15:49:01
SiteUK_Durham
EntryDUNE_UK_SGridDurham_ce4
Last heartbeat2025-11-03 18:37:45
From worker nodeHostnamen200.dur.scotgrid.ac.uk
cpuinfoIntel(R) Xeon(R) Gold 5220 CPU @ 2.20GHz
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors2
RSS bytes4194304000 (4000 MiB)
Wall seconds limit171000 (47 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2025-11-03 15:51:08
Input filesvd-protodune:np02vd_raw_run040346_3635_df-s04-d1_dw_0_20251103T151502.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-11-03 18:37:45
Saved logsjustin-logs:236737.148-dunegpschedd02.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

.387459        23     
produce:pandora:StandardPandora                   15.4699       163.882       3061.58       23.3842       618.099        23     
produce:pandoraTrack:LArPandoraTrackCreation     0.843441       3.07071       26.1357       1.75169       5.0049         23     
produce:pandoraGnocalo:GnocchiCalorimetry        0.0247736     0.0386466      0.10699      0.0355932     0.0160787       23     
[art]:TriggerResults:TriggerResultInserter      3.3545e-05    4.74947e-05   8.3234e-05    4.5162e-05    1.13497e-05      23     
end_path:out1:RootOutput                         6.505e-06    9.91117e-06   2.1436e-05     8.711e-06    3.8842e-06       23     
end_path:out1:RootOutput(write)                   4.37976       4.97015       8.83935       4.61855      0.930679        23     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 9785.28 MB
  Peak resident set size usage (VmHWM): 7746.4 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040346_3635_df-s04-d1_dw_0_20251103T151502_reco_stage1_20251103T183440_keepup.root
\tHists: np02vd_raw_run040346_3635_df-s04-d1_dw_0_20251103T151502_reco_stage1_20251103T183440_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040346_3635_df-s04-d1_dw_0_20251103T151502_reco_stage1_20251103T183440_keepup.root
Ran successfully
{
  "name": "np02vd_raw_run040346_3635_df-s04-d1_dw_0_20251103T151502_reco_stage1_20251103T183440_keepup.root",
  "namespace": "vd-protodune-det-reco",
  "metadata": {
    "core.file_format": "artroot",
    "core.application.name": "reco",
    "core.application.family": "dunesw",
    "core.application.version": "v10_11_00d00",
    "core.data_tier": "full-reconstructed",
    "dune.config_file": "standard_reco_stage1_protodunevd_keepup_all.fcl",
    "dune.campaign": "vd-protodune-reco-keepup-v0",
    "core.start_time": 1762194882.0,
    "core.end_time": 1762194882.0,
    "core.events": [
      335665,
      335669,
      335673,
      335677,
      335681,
      335685,
      335689,
      335693,
      335697,
      335701,
      335705,
      335709,
      335713,
      335717,
      335721,
      335725,
      335729,
      335733,
      335737,
      335741,
      335745,
      335749,
      335753
    ],
    "core.event_count": 23,
    "core.first_event_number": 335665,
    "core.last_event_number": 335753,
    "core.data_stream": "cosmics",
    "core.file_content_status": "good",
    "core.file_type": "detector",
    "core.run_type": "vd-protodune",
    "core.runs": [
      40346
    ],
    "core.runs_subruns": [
      4034600001
    ],
    "dune.daq_test": false,
    "retention.status": "active",
    "retention.class": "physics"
  },
  "parents": [
    {
      "did": "vd-protodune:np02vd_raw_run040346_3635_df-s04-d1_dw_0_20251103T151502.hdf5"
    }
  ]
}Forming hist metadata
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
    conn = connection.create_connection(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
    raise err
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
    sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
    conn = self._new_conn()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
    raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x15236e559b80>: Failed to establish a new connection: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040346_3635_df-s04-d1_dw_0_20251103T151502.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x15236e559b80>: Failed to establish a new connection: [Errno 110] Connection timed out'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040346_3635_df-s04-d1_dw_0_20251103T151502.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x15236e559b80>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in hist metadata
justIN time: 2025-11-04 15:55:32 UTC       justIN version: 01.05.01