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Jobsub ID 241756.63@dunegpschedd01.fnal.gov

Jobsub ID241756.63@dunegpschedd01.fnal.gov
Workflow ID9517
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors2
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-11-01 19:38:38
SiteUK_Durham
EntryDUNE_UK_SGridDurham_ce4
Last heartbeat2025-11-01 22:30:49
From worker nodeHostnamen217.dur.scotgrid.ac.uk
cpuinfoIntel(R) Xeon(R) Gold 5220 CPU @ 2.20GHz
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors2
RSS bytes4194304000 (4000 MiB)
Wall seconds limit171000 (47 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2025-11-01 19:40:08
Input filesvd-protodune:np02vd_raw_run040346_0409_df-s04-d1_dw_0_20251101T173533.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-11-01 22:30:49
Saved logsjustin-logs:241756.63-dunegpschedd01.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

----------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                      5.7144e-05    7.16549e-05   0.000129432   6.3097e-05    1.88059e-05      23     
produce:tpcrawdecoder:PDVDTPCReader               118.475       168.065       221.276       167.848       27.9809        23     
produce:triggerrawdecoder:PDVDTriggerReader4     0.963338       1.23517       1.90856       1.22176       0.21665        23     
produce:pdvddaphne:DAPHNEReaderPDVD             0.000406059   0.000446409   0.000704241   0.000424999   6.43495e-05      23     
produce:ophit:OpHitFinder                       5.5371e-05    8.94125e-05   0.000483547   6.3336e-05    8.56948e-05      23     
produce:opflash:OpFlashFinderVerticalDrift      4.6054e-05    6.52704e-05   0.000270621   5.5876e-05    4.43645e-05      23     
produce:wclsdatavd:WireCellToolkit                61.8739       86.8603       180.82        72.293        31.1575        23     
produce:gaushit:GausHitFinder                     1.1775        1.61928       3.02259       1.53301      0.358597        23     
produce:nhitsfilter:NumberOfHitsFilter          0.000271905   0.000364377   0.00055739    0.000356323   6.64895e-05      23     
produce:reco3d:SpacePointSolver                   8.48082       13.6978       33.956        13.0177       5.0885         23     
produce:hitpdune:DisambigFromSpacePoints         0.155334      0.262633      0.837357      0.222302      0.141648        23     
produce:pandora:StandardPandora                   20.2085       158.019       2749.1        32.6431       552.792        23     
produce:pandoraTrack:LArPandoraTrackCreation     0.767061       1.5128        5.1112        1.21385      0.879274        23     
produce:pandoraGnocalo:GnocchiCalorimetry        0.0243642     0.0343533     0.0687818     0.0325492    0.00943586       23     
[art]:TriggerResults:TriggerResultInserter      2.1456e-05    3.01271e-05   7.1666e-05    2.7206e-05    9.90638e-06      23     
end_path:out1:RootOutput                         5.73e-06     8.64557e-06   2.6615e-05     7.849e-06    4.10041e-06      23     
end_path:out1:RootOutput(write)                   4.41089       4.90068       6.14568       4.65993       0.52718        23     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 8479.59 MB
  Peak resident set size usage (VmHWM): 6451.04 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run040346_0409_df-s04-d1_dw_0_20251101T173533_reco_stage1_20251101T222809_keepup.root
\tHists: np02vd_raw_run040346_0409_df-s04-d1_dw_0_20251101T173533_reco_stage1_20251101T222809_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run040346_0409_df-s04-d1_dw_0_20251101T173533_reco_stage1_20251101T222809_keepup.root
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
    conn = connection.create_connection(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
    raise err
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
    sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
    conn = self._new_conn()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
    raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x150f8b171520>: Failed to establish a new connection: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040346_0409_df-s04-d1_dw_0_20251101T173533.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x150f8b171520>: Failed to establish a new connection: [Errno 110] Connection timed out'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser3.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_0_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np02vd_raw_run040346_0409_df-s04-d1_dw_0_20251101T173533.hdf5&namespace=vd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x150f8b171520>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in reco metadata
justIN time: 2025-11-03 18:45:44 UTC       justIN version: 01.05.01