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Jobsub ID 264305.33@dunegpschedd01.fnal.gov

Jobsub ID264305.33@dunegpschedd01.fnal.gov
Workflow ID11057
Stage ID1
User nameykermaid@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors2
GPUNo
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2025-12-06 08:37:47
SiteUK_Durham
EntryDUNE_UK_SGridDurham_ce4
Last heartbeat2025-12-06 11:39:16
From worker nodeHostnamen170.dur.scotgrid.ac.uk
cpuinfoIntel(R) Xeon(R) Gold 5220 CPU @ 2.20GHz
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors2
RSS bytes4194304000 (4000 MiB)
Wall seconds limit171000 (47 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2025-12-06 08:39:41
Input filesvd-protodune:np02vd_raw_run041215_1929_df-s04-d0_dw_0_20251206T073847.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-12-06 11:39:16
Saved logsjustin-logs:264305.33-dunegpschedd01.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

========
Full event                                        249.653       402.832       759.624       333.503       153.924        24     
----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                      6.1031e-05    9.72035e-05   0.000142178   9.47825e-05   2.47374e-05      24     
produce:tpcrawdecoder:PDVDTPCReader               73.2199       82.6401       121.762       78.2711       11.4327        24     
produce:triggerrawdecoder:PDVDTriggerReader4      0.50408      0.560327      0.689473      0.536326      0.0537889       24     
produce:pdvddaphne:DAPHNEReaderPDVD             0.000441039   0.000480266   0.00075379    0.00046405    6.18967e-05      24     
produce:ophit:OpHitFinder                       6.8112e-05    0.000123956   0.000504374   0.000100964   8.21651e-05      24     
produce:opflash:OpFlashFinderVerticalDrift      5.6873e-05    8.26077e-05   0.000299741   6.7376e-05    4.87269e-05      24     
produce:wclsdatavd:WireCellToolkit                116.755       203.097       421.068       160.823       86.3361        24     
produce:gaushit:GausHitFinder                     1.24856       2.83451       6.71009       2.03972       1.62433        24     
produce:nhitsfilter:NumberOfHitsFilter          0.000267637   0.000357744   0.000606496   0.000361126   7.34074e-05      24     
produce:reco3d:SpacePointSolver                    6.672        17.1841       45.1727       14.0583       10.3234        24     
produce:hitpdune:DisambigFromSpacePoints         0.144864      0.419533       1.02257      0.319139       0.26312        24     
produce:pandora:StandardPandora                   26.1944       85.6206       250.199       73.8892       55.6782        24     
produce:pandoraTrack:LArPandoraTrackCreation     0.260952       2.13285       6.34533       1.39634       1.78472        24     
produce:pandoraGnocalo:GnocchiCalorimetry        0.0148359     0.0490037     0.127682      0.0336888     0.0345541       24     
[art]:TriggerResults:TriggerResultInserter      2.4562e-05    3.6068e-05    8.8105e-05    3.0072e-05    1.31854e-05      24     
end_path:out1:RootOutput                         6.215e-06    9.11454e-06   2.3663e-05     7.015e-06    4.55089e-06      24     
end_path:out1:RootOutput(write)                   4.64278       8.18797       15.3305       6.27292       3.63148        24     
==================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 5538.19 MB
  Peak resident set size usage (VmHWM): 3434.47 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np02vd_raw_run041215_1929_df-s04-d0_dw_0_20251206T073847_reco_stage1_20251206T112235_keepup.root
\tHists: np02vd_raw_run041215_1929_df-s04-d0_dw_0_20251206T073847_reco_stage1_20251206T112235_keepup_hists.root
Forming reco metadata
Successfully opened file np02vd_raw_run041215_1929_df-s04-d0_dw_0_20251206T073847_reco_stage1_20251206T112235_keepup.root
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 411, in connect
    self.sock = ssl_wrap_socket(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/ssl_.py", line 449, in ssl_wrap_socket
    ssl_sock = _ssl_wrap_socket_impl(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/ssl_.py", line 493, in _ssl_wrap_socket_impl
    return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 501, in wrap_socket
    return self.sslsocket_class._create(
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1041, in _create
    self.do_handshake()
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/ssl.py", line 1310, in do_handshake
    self._sslobj.do_handshake()
socket.timeout: _ssl.c:1112: The handshake operation timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 532, in increment
    raise six.reraise(type(error), error, _stacktrace)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/packages/six.py", line 770, in reraise
    raise value
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 385, in _make_request
    self._raise_timeout(err=e, url=url, timeout_value=conn.timeout)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 336, in _raise_timeout
    raise ReadTimeoutError(
urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/ff18e11900bfcc2b467fc81eba35d7e7de647a80/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1259, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v4_1_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 529, in send
    raise ReadTimeout(e, request=request)
requests.exceptions.ReadTimeout: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Read timed out. (read timeout=600)
Error in reco metadata
justIN time: 2025-12-18 23:23:51 UTC       justIN version: 01.05.03