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Jobsub ID 272049.1@dunegpschedd02.fnal.gov

Jobsub ID272049.1@dunegpschedd02.fnal.gov
Workflow ID11907
Stage ID1
User nameykermaid@fnal.gov
RequestedProcessors1
GPUNo
RSS bytes4194304000 (4000 MiB)
Wall seconds limit3600 (1 hours)
Submitted time2026-01-14 14:34:42
SiteUK_RAL-PPD
EntryCMSHTPC_T2_UK_SGrid_RALPP_hep207
Last heartbeat2026-01-14 14:36:57
From worker nodeHostnameheplnc164.pp.rl.ac.uk
cpuinfoAMD EPYC 7763 64-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes4194304000 (4000 MiB)
Wall seconds limit257400 (71 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Started2026-01-14 14:35:58
Input filesvd-protodune-det-reco:np02vd_raw_run039350_2302_df-s04-d1_dw_0_20250911T130440_reco_stage1_20250911T144445_keepup.root
JobscriptExit code9
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2026-01-14 14:36:57
Saved logsjustin-logs:272049.1-dunegpschedd02.fnal.gov.logs.tgz
List job events     Cached HTCondor job logs

Jobscript log (last 10,000 characters)

rg/products/common/db/
GENIE_XSEC_TUNE=AR23_20i_00_000
SETUP_DUNECALIB=dunecalib v10_16_00d00 -f Linux64bit+3.10-2.17 -z /cvmfs/dune.opensciencegrid.org/products/dune -q e26:prof
CRYDATAPATH=/cvmfs/larsoft.opensciencegrid.org/products/cry/v1_7q/Linux64bit+3.10-2.17-e26-prof/cry_v1.7/data
LHAPDF_LIB=/cvmfs/larsoft.opensciencegrid.org/products/lhapdf/v6_5_5/Linux64bit+3.10-2.17-e26-p3915-prof/lib
G4INCLDATA=/cvmfs/larsoft.opensciencegrid.org/products/g4incl/v1_0/G4INCL1.0
HEP_CONCURRENCY_FQ_DIR=/cvmfs/larsoft.opensciencegrid.org/products/hep_concurrency/v1_09_02/slf7.x86_64.e26.prof
CETLIB_DIR=/cvmfs/larsoft.opensciencegrid.org/products/cetlib/v3_18_02
CATCH_LIB=/cvmfs/larsoft.opensciencegrid.org/products/catch/v3_3_2/Linux64bit+3.10-2.17-e26/lib
SETUP_SCITOKENS_CPP=scitokens_cpp v1_0_1a -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:sql34001
PROTOBUF_LIB=/cvmfs/larsoft.opensciencegrid.org/products/protobuf/v3_21_12a/Linux64bit+3.10-2.17-e26/lib
ROOT_INC=/cvmfs/larsoft.opensciencegrid.org/products/root/v6_28_12/Linux64bit+3.10-2.17-e26-p3915-prof/include
HUB_DIR=/cvmfs/larsoft.opensciencegrid.org/products/hub/v2_14_2
GEANT4REWEIGHT_DIR=/cvmfs/larsoft.opensciencegrid.org/products/geant4reweight/v01_20_14
DUNERECO_VERSION=v10_16_00d00
LARPANDORA_LIB=/cvmfs/larsoft.opensciencegrid.org/products/larpandora/v10_01_11/slf7.x86_64.e26.prof/lib
IFDH_ART_INC=/cvmfs/larsoft.opensciencegrid.org/products/ifdh_art/v2_17_08/slf7.x86_64.e26.prof/inc
MARLEY_LIB=/cvmfs/larsoft.opensciencegrid.org/products/marley/v1_2_1d/Linux64bit+3.10-2.17-e26-prof/lib
SETUP_LAREVT=larevt v10_00_18 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
HDF5_INC=/cvmfs/larsoft.opensciencegrid.org/products/hdf5/v1_12_2a/Linux64bit+3.10-2.17-e26-prof/include
SETUP_CANVAS=canvas v3_16_04 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
DUNEDETDATAFORMATS_INC=/cvmfs/dune.opensciencegrid.org/products/dune/dunedetdataformats/v4_4_5/include
SETUP_TBB=tbb v2021_9_0 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26
PYTHIA_INC=/cvmfs/larsoft.opensciencegrid.org/products/pythia/v6_4_28x/Linux64bit+3.10-2.17-e26-prof/include
SETUP_DUNESW=dunesw v10_16_00d00 -f Linux64bit+3.10-2.17 -z /cvmfs/dune.opensciencegrid.org/products/dune -q e26:prof
PERL_MM_OPT=INSTALL_BASE=/cvmfs/larsoft.opensciencegrid.org/products/mrb/v6_09_11/slf7.x86_64/CPAN
GIT_EXEC_PATH=/cvmfs/larsoft.opensciencegrid.org/products/git/v2_45_1/Linux64bit+3.10-2.17/libexec/git-core
PROTODUNEANA_INC=/cvmfs/dune.opensciencegrid.org/products/dune/protoduneana/v10_16_00d00/include
DUNEDATAPREP_LIB=/cvmfs/dune.opensciencegrid.org/products/dune/dunedataprep/v10_16_00d00/slf7.x86_64.e26.prof/lib
LARCV2_ROOT6=0
DUNERECO_DIR=/cvmfs/dune.opensciencegrid.org/products/dune/dunereco/v10_16_00d00
WIRECELL_LIB=/cvmfs/larsoft.opensciencegrid.org/products/wirecell/v0_32_1/Linux64bit+3.10-2.17-e26-prof/lib
TRITON_INC=/cvmfs/larsoft.opensciencegrid.org/products/triton/v2_25_0d/Linux64bit+3.10-2.17-e26/include
LIBJPEG_TURBO_INC=/cvmfs/larsoft.opensciencegrid.org/products/libjpeg_turbo/v2_1_0/Linux64bit+3.10-2.17/include
LAREVENTDISPLAY_LIB=/cvmfs/larsoft.opensciencegrid.org/products/lareventdisplay/v10_00_35/slf7.x86_64.e26.prof/lib
PPFX_VERSION=v02_20_07
NUG4_VERSION=v1_16_11
SETUP_LARDATAALG=lardataalg v10_02_01 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
LARCOREALG_INC=/cvmfs/larsoft.opensciencegrid.org/products/larcorealg/v10_00_03/include
G4PARTICLEHPDATA=/cvmfs/larsoft.opensciencegrid.org/products/g4tendl/v1_3_2/G4TENDL1.3.2
SETUP_LARANA=larana v10_01_08 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_LARSOFT=larsoft v10_16_00 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_CETLIB=cetlib v3_18_02 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
SETUP_FHICLCPP=fhiclcpp v4_18_04 -f Linux64bit+3.10-2.17 -z /cvmfs/larsoft.opensciencegrid.org/products -q e26:prof
OPENBLAS_INC=/cvmfs/larsoft.opensciencegrid.org/products/openblas/v0_3_23/Linux64bit+3.10-2.17-e26/include
PYTHON_INCLUDE=/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/include/python3.9
_=/usr/bin/env
Will use justin-get-file
pfn: root://xrootd-archive.cr.cnaf.infn.it:1096//dune/vd-protodune-det-reco/6c/37/np02vd_raw_run039350_2302_df-s04-d1_dw_0_20250911T130440_reco_stage1_20250911T144445_keepup.root
did: vd-protodune-det-reco:np02vd_raw_run039350_2302_df-s04-d1_dw_0_20250911T130440_reco_stage1_20250911T144445_keepup.root
Running reco stage1
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  emtrkmichelid
  opflash
  ophit
  opslicer
  pandoraStdcalo
  pandoracalipid
  pdvddaphne
  rns
  tpcrawdecoder
  triggerrawdecoder
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_16_00d00/gdml/protodunevd_v5_ggd.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Error: Unsupported GDML Tag Used :gdml_simple_extension. Please Check Geometry/Schema.
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 292
Info in <TGeoManager::CloseGeometry>: 16484 nodes/ 2469 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
GeoApaChannelGroupService::ctor: Group 0 (apa0) has 3072 channels from 3/3 readout planes.
GeoApaChannelGroupService::ctor: Group 1 (apa1) has 3072 channels from 3/3 readout planes.
GeoApaChannelGroupService::ctor: Group 2 (apa2) has 3072 channels from 3/3 readout planes.
GeoApaChannelGroupService::ctor: Group 3 (apa3) has 3072 channels from 3/3 readout planes.
DAPHNE Channel Map: Building DAPHNE channel map from file PDVD_PDS_Mapping_v09162025.json
PDSP Channel Map: Building RCE TPC wiremap from file protoDUNETPCChannelMap_RCE_v4.txt
PDSP Channel Map: Building FELIX TPC wiremap from file protoDUNETPCChannelMap_RCE_v4.txt
PDSP Channel Map: Building SSP channel map from file protoDUNESSPChannelMap_v1.txt
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_U (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_V (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_Y (Potential memory leak).
TPC Channel Map: Building TPC wiremap from file PD2VDTPCChannelMap_v2.txt
*************************************************************************************************************************************
Unique Ptrs that are added to the event
*************************************************************************************************************************************
* Data Product Name: InitialTrack             * Instance Name:  * Type: std::vector<recob::Track, std::allocator<recob::Track> >*   *
* Data Product Name: ShowerPCA                * Instance Name:  * Type: std::vector<recob::PCAxis, std::allocator<recob::PCAxis> >* *
* Data Product Name: shower                   * Instance Name:  * Type: std::vector<recob::Shower, std::allocator<recob::Shower> >* *
* Association Name:  PFParticlePCAxisAssn     * Instance Name:  * Type: art::Assns<recob::PFParticle, recob::PCAxis, void>*         *
* Association Name:  ShowerPCAxisAssn         * Instance Name:  * Type: art::Assns<recob::Shower, recob::PCAxis, void>*             *
* Association Name:  ShowerTrackAssn          * Instance Name:  * Type: art::Assns<recob::Shower, recob::Track, void>*              *
* Association Name:  ShowerTrackHitAssn       * Instance Name:  * Type: art::Assns<recob::Track, recob::Hit, void>*                 *
* Association Name:  clusterAssociationsbase  * Instance Name:  * Type: art::Assns<recob::Shower, recob::Cluster, void>*            *
* Association Name:  hitAssociationsbase      * Instance Name:  * Type: art::Assns<recob::Shower, recob::Hit, void>*                *
* Association Name:  pfShowerAssociationsbase * Instance Name:  * Type: art::Assns<recob::Shower, recob::PFParticle, void>*         *
* Association Name:  spShowerAssociationsbase * Instance Name:  * Type: art::Assns<recob::Shower, recob::SpacePoint, void>*         *
*************************************************************************************************************************************
MultiPandoraApiImpl::DeletePandoraInstances - unable to find daughter instances associated with primary 0
MultiPandoraApiImpl::DeletePandoraInstances - unable to find daughter instances associated with primary 0
%MSG-s ArtException:  WireCellToolkit:wclsdatavd@Construction  14-Jan-2026 14:36:31 GMT ModuleConstruction
cet::exception caught in art
---- Configuration BEGIN
  make_tool: 
  ---- Configuration BEGIN
    UnknownPlugin
    ---- Configuration BEGIN
      Unable to load requested library /cvmfs/larsoft.opensciencegrid.org/products/larwirecell/v10_01_28/slf7.x86_64.e26.prof/lib/liblarwirecell_Tools_WCLS_tool.so
      libjsonnet.so.0: cannot open shared object file: No such file or directory
    ---- Configuration END
    Plugin WCLS with version Unknown was not registered.
    Perhaps your plugin type is misspelled or is not a plugin recognized by this
    system.
  ---- Configuration END
  Exception caught while processing plugin spec: WCLS
---- Configuration END
%MSG
Art has completed and will exit with status 9.
Error in reco1
justIN time: 2026-02-04 10:09:29 UTC       justIN version: 01.06.00